Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan7g0013 ATGGATTCTAACCCTAACCCCCTCTCCGCCCCACACGCCGCCTCCGAGGCACCCCCTCCGCCGGAAACCCCCGACGCCAACGGCAACGGCTCGCACCCCCGGGCTCCAAAACCCTTGATCTCCGACAGTGCCGCCGTGACCAGCGGCACCACCGAGAAGGACCAATCCGGTGGCGAGGAGGAGACCACCAGCAAACGCCGCCGCCGAAAGAGCCGATGGGACCCACAGCCAGACTCCAACGAACAAAACGGCTCCGATTCTGGCACCAAGAAGAGGAAGTCACGATGGGCGGAGGAGCCAACGCCGGAGCCAACGCCGGTGTCCATTCATCTGGGAGATCTCATGGGATTGGGAGGTATTGAATTAGATAGCGAGATTCCTGTTTTGAATTCTAGGCTTTTAGAGATTAGTAGGATGATGCAATCTGGTTTGCCCTTAGATGATCGCCCCGAAGGTGCTCGATCACCTTCCCCTGAGCCGGTTTATGATAACATGGGTGTTAGGATTAATACTAGGGAATATCGTGCTCGTGAGAGGTTGCAAAAAGAGAGACAGGAGATTATATCCGCTATTATTAAGAAAAACCCTGCTTTCAAGCCACCTGCTGATTATAGGCCACCAAAGCTTCATAAAAAGCTTTATATCCCCATGAAGGAGTACCCTGGTTATAATTTTATCGGCCTCATTATTGGGCCGAGGGGGAACACACAGAAGCGCATGGAGAAGGAAACCGGTGCGAAGATTGTAATTCGTGGAAAAGGGTCAGTGAAGGAAGGGAGGTTGCAGCAGAAGAGGGATTATAAGCCTGATCTTTCAGATAACGAGGATTTGCATGTTTTGGTGGAGGCGGAGACGCAGGAATCACTTGATGCTGCTGCTGGTATGGTGGAGAAGCTGTTGCAGCCGGTGGATGAGGTGTTGAATGAGCATAAGAGACAGCAGCTTAAGGAGCTCGCTGCTTTGAATGGGACAATCAGGGATGAAGAGTTTTGCAGGTTGTGTGGTGAGCCTGGCCATCGTCAGTATGCATGTCCTACGAGGAACTCAACATTTAAGAGTGAAGTTGTGTGTAAGCACTGTGGGGATGGTGGTCATCCGAGCATAGATTGTCCAGTGAAGGGTGCTACTGGGAAGAAGATGGATGATGAATATCAGAACTTCCTTGCCGAGTTGGGAGGTTCAGTTCCTGAATCTGCAACAACACAAACCAATGTGTTGGCAATTGGTTCTGGCAATTCTGGAAGCAATCCTCCATGGGCTAACAATTCTGGCTCGAGTGGTGGTACACAGCATGCTGGTTTAGGGTTTAATCCAGCTAAAAAGGAAATTGATGATACAAACTTGTACATAGGGTATTTGCCACCAACCCTTGAGGATGATGGTCTGATCCAATTGTTTCAACAATTTGGGGAGATTGTCATGGCAAAAGTTATAAAGGATCGACTGACTGGTTTAAGTAAAGGATATGGGTTTGTCAAGTATGCTGATGTTCAAATGGCGAACACTGCAATTGCGTCCATGAATGGTTATCACCTTGAGGGTCGGACCATTGCGGTGAGAGTTGCTGGTAAGCCTCCTCAGCCTGTTGTACCTCCTGGCCCACCAGCATCTGCTGTGCCCACTTATCCTGTCCAAACACAGCCACACAGTGCCTACCCATCCCAACAATATAGTGTCGGTGGTCCTCTTGGGAGTGCACCCCCTGGGAGTTATGGTCGGAACCCTGTCCCATGGGGACCTCCTGTCCCTCCTCCATATGCACAGTATCCTCCTCCCCCGCCGGGGTCAACTGTGTATCCTCCTATGCAAGGTTACCCTATGGCTCCTCATGGTGTTCAATATCCACCCCCTCCTGGTGCCCCACCACAGCCAGCAACAACTTCTGGTGAAGCGCATCAGAGTTACCCTCCCGGTGTTCAGACCGAGAACAGTACCTCCTCCACTCAGCCTGTACTAGCCAATGTATATGGAAACTCAGTAACTTCGATGCCACCACCAGCTCAAAATACATTTCCTGCATCTTATGGCTATCCGCCTTACTACGCTGCTGTTCCCCCGCCACTCCCAGTTCCTGTCTCGGCTGCAGACCAACCCCACAACATGGCTAACGTGCCGTGGGCCAGTAATCCTCCAGTGCCACCATCTACTGCTTCACCTGCAGAGAATCAATCCCAGAGTACTGGCAATGTGCCTTGGGCCACAAATCCACCAGTGCCTCCTCCTCCTTCATCTGCGGAGAAATCATCATATGGTGCAGATTCAGAGTACGAGAAGTTCATAGCTGAGATGAAATGA 2295 0.512 MDSNPNPLSAPHAASEAPPPPETPDANGNGSHPRAPKPLISDSAAVTSGTTEKDQSGGEEETTSKRRRRKSRWDPQPDSNEQNGSDSGTKKRKSRWAEEPTPEPTPVSIHLGDLMGLGGIELDSEIPVLNSRLLEISRMMQSGLPLDDRPEGARSPSPEPVYDNMGVRINTREYRARERLQKERQEIISAIIKKNPAFKPPADYRPPKLHKKLYIPMKEYPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSVKEGRLQQKRDYKPDLSDNEDLHVLVEAETQESLDAAAGMVEKLLQPVDEVLNEHKRQQLKELAALNGTIRDEEFCRLCGEPGHRQYACPTRNSTFKSEVVCKHCGDGGHPSIDCPVKGATGKKMDDEYQNFLAELGGSVPESATTQTNVLAIGSGNSGSNPPWANNSGSSGGTQHAGLGFNPAKKEIDDTNLYIGYLPPTLEDDGLIQLFQQFGEIVMAKVIKDRLTGLSKGYGFVKYADVQMANTAIASMNGYHLEGRTIAVRVAGKPPQPVVPPGPPASAVPTYPVQTQPHSAYPSQQYSVGGPLGSAPPGSYGRNPVPWGPPVPPPYAQYPPPPPGSTVYPPMQGYPMAPHGVQYPPPPGAPPQPATTSGEAHQSYPPGVQTENSTSSTQPVLANVYGNSVTSMPPPAQNTFPASYGYPPYYAAVPPPLPVPVSAADQPHNMANVPWASNPPVPPSTASPAENQSQSTGNVPWATNPPVPPPPSSAEKSSYGADSEYEKFIAEMK* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan7g0013 764 Gene3D - 421 528 IPR012677 -
Lan7g0013 764 CDD SF1_like-KH 210 326 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 85 99 - -
Lan7g0013 764 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 446 524 IPR000504 GO:0003723
Lan7g0013 764 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 209 335 IPR036612 GO:0003723
Lan7g0013 764 MobiDBLite consensus disorder prediction 54 76 - -
Lan7g0013 764 SMART kh_6 209 301 IPR004087 GO:0003676
Lan7g0013 764 MobiDBLite consensus disorder prediction 1 110 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 718 732 - -
Lan7g0013 764 Pfam KH domain 224 272 IPR004088 GO:0003723
Lan7g0013 764 ProSiteProfiles Zinc finger CCHC-type profile. 357 371 IPR001878 GO:0003676|GO:0008270
Lan7g0013 764 Gene3D - 122 200 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 609 647 - -
Lan7g0013 764 ProSiteProfiles Type-1 KH domain profile. 224 296 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 626 647 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 523 576 - -
Lan7g0013 764 Gene3D - 330 382 - -
Lan7g0013 764 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 31 710 - -
Lan7g0013 764 PANTHER BRANCHPOINT-BRIDGING PROTEIN-LIKE 710 764 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 686 753 - -
Lan7g0013 764 SUPERFAMILY RNA-binding domain, RBD 438 534 IPR035979 GO:0003676
Lan7g0013 764 MobiDBLite consensus disorder prediction 542 561 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 525 541 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 12 26 - -
Lan7g0013 764 PANTHER RNA-BINDING PROTEIN RELATED 710 764 IPR045071 -
Lan7g0013 764 PANTHER RNA-BINDING PROTEIN RELATED 31 710 IPR045071 -
Lan7g0013 764 SMART rrm1_1 447 520 IPR000504 GO:0003723
Lan7g0013 764 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 448 517 IPR000504 GO:0003723
Lan7g0013 764 SUPERFAMILY Retrovirus zinc finger-like domains 327 373 IPR036875 GO:0003676|GO:0008270
Lan7g0013 764 MobiDBLite consensus disorder prediction 410 437 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 410 432 - -
Lan7g0013 764 MobiDBLite consensus disorder prediction 610 624 - -
Lan7g0013 764 Pfam Splicing factor 1 helix-hairpin domain 92 205 IPR032570 -
Lan7g0013 764 MobiDBLite consensus disorder prediction 144 164 - -
Lan7g0013 764 SMART c2hcfinal6 356 372 IPR001878 GO:0003676|GO:0008270
Lan7g0013 764 SMART c2hcfinal6 330 346 IPR001878 GO:0003676|GO:0008270
Lan7g0013 764 ProSiteProfiles Zinc finger CCHC-type profile. 331 345 IPR001878 GO:0003676|GO:0008270
Lan7g0013 764 Gene3D K Homology domain, type 1 201 329 IPR036612 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan7g0013 Lan-Chr7 57787 62431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan7g0013 446 526 Eukaryotic Initiation Factors Gene Family AT1G49760 39.506 4.94e-10 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan7g0013 K13095 - gmx:100800982 1047.73