Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan6g2266 | ATGGGTGAAGAGAAAGGAATAATAACAGTACCAGAATCAGTGTTGAAGAAGCAGAAGAGATCAGAAGAATGGGCATTGGCTAAATCAAAACAAGCTCAAGTTGATAAGAAGAATAGATCTTTGAACCGTAAGCTCATATTCAACAGAGCAAAACTGTATGCAAAAGAATACACTGATCAAGATAAGGAATTGATAAGGTTGAAACGTGAGGCTAAGTTTAGAGGTGGATTTTATGTTGATCCTGAACCTAAGCTTTTGTTCATTATTCGCATCCGTGGTATTAATGGCATGGACCCTAAGACTAGGAAGATTCTCCAGCTCTTGCGTTTGAGACAGGTTTTCAATGGTGTATTCATTAAAGTGAACAAGCCATTAGTGAACATGTTGCGCAGGGTTGAGCCTTATGTTACCTATGGATACCCAAATCTGAAGAGTGTGAGAGAACTTATTTACAAGAGGGGCTACGGCAAGCTAAACAAGCAGAGAATTGCTCTGACTGATAACTCCATCATCGAGCAGGGACTCGGGAAGCAGGGAATCATATCCACAGAAGATCTTATCCATGAGATCCTAACTGTTGGACCTCATTTCAAGGAAGCAAACAACTTCCTCTGGCCATTTAAGCTGAAGGCTCCTTTGGGCGGCTTAAAGAAGAAGAGGAACCACTATGTTGAAGGTGGAGATGCTGGAAACAGGGAGAACTACATTAATGAGCTAATCAGGAGAATGAATTAG | 735 | 0.4109 | MGEEKGIITVPESVLKKQKRSEEWALAKSKQAQVDKKNRSLNRKLIFNRAKLYAKEYTDQDKELIRLKREAKFRGGFYVDPEPKLLFIIRIRGINGMDPKTRKILQLLRLRQVFNGVFIKVNKPLVNMLRRVEPYVTYGYPNLKSVRELIYKRGYGKLNKQRIALTDNSIIEQGLGKQGIISTEDLIHEILTVGPHFKEANNFLWPFKLKAPLGGLKKKRNHYVEGGDAGNRENYINELIRRMN* | 245 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan6g2266 | 244 | Pfam | Ribosomal L30 N-terminal domain | 10 | 81 | IPR012988 | - | |
| Lan6g2266 | 244 | SUPERFAMILY | Ribosomal protein L30p/L7e | 85 | 244 | IPR036919 | - | |
| Lan6g2266 | 244 | PANTHER | 60S RIBOSOMAL PROTEIN L7-RELATED | 9 | 244 | - | - | |
| Lan6g2266 | 244 | PANTHER | 60S RIBOSOMAL PROTEIN L7 | 9 | 244 | IPR039699 | - | |
| Lan6g2266 | 244 | CDD | Ribosomal_L7_archeal_euk | 85 | 244 | IPR035808 | - | |
| Lan6g2266 | 244 | Gene3D | - | 85 | 244 | IPR036919 | - | |
| Lan6g2266 | 244 | TIGRFAM | uL30_euk: 60S ribosomal protein uL30 | 11 | 244 | IPR005998 | GO:0000463|GO:0003735|GO:0022625 | |
| Lan6g2266 | 244 | ProSitePatterns | Ribosomal protein L30 signature. | 104 | 136 | IPR018038 | - | |
| Lan6g2266 | 244 | Pfam | Ribosomal protein L30p/L7e | 86 | 136 | IPR016082 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan6g2266 | Lan-Chr6 | 32856237 | 32860404 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan6g2266 | 1 | 244 | Cytoplasmic Ribosomal Protein Gene Family | AT2G44120 | 80.328 | 5.29e-144 | 401 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan6g2266 | K02937 | - | jre:109006184 | 406.757 |