Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2249 ATGCCAACTCGATCAACCGGAACCATTGCTCAAGACTGGAACCCAGTGATTCTCCACAAATCCAAGCCCAAGGCTCATGACCTTCGCAACGCCAAGGCTGTGAACCAAGCCCTCCGAACCGGTGCAGAGGTTCAAACAATTAAGAAATTCGATGCCGGTTCGAATAAAAAAACCGCCGGTCCGGTTATTTATGCTCGGAAGCTCGATGAAGCGGCTGAACCTGCGGCGTTGGAAAAGGTGGCGGTGGAGGTGAGGCACGCGATACAGAAGGCGCGTTTGGAGAAGAAAATGAGTCAGAGTGAGTTAGCGAAATTGATTAATGAACGGAATCAGGTTGTGCAGGAATATGAGAATGGAAAAGCTGTTCCGAACCAGGTAGTGTTGGCTAAGATGGAGAAAGTGCTTGGTGTTAAACTTAGAGGGAAAATTGGAAAATGA 438 0.484 MPTRSTGTIAQDWNPVILHKSKPKAHDLRNAKAVNQALRTGAEVQTIKKFDAGSNKKTAGPVIYARKLDEAAEPAALEKVAVEVRHAIQKARLEKKMSQSELAKLINERNQVVQEYENGKAVPNQVVLAKMEKVLGVKLRGKIGK* 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2249 145 PANTHER MULTIPROTEIN-BRIDGING FACTOR 1C 1 144 - -
Lan6g2249 145 CDD HTH_XRE 87 139 IPR001387 -
Lan6g2249 145 Gene3D - 72 145 IPR010982 GO:0003677
Lan6g2249 145 Coils Coil 88 115 - -
Lan6g2249 145 PANTHER ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 1 144 - -
Lan6g2249 145 SMART mbf_short4 87 142 IPR001387 -
Lan6g2249 145 Pfam Multiprotein bridging factor 1 11 80 IPR013729 -
Lan6g2249 145 Pfam Helix-turn-helix 88 139 IPR001387 -
Lan6g2249 145 ProSiteProfiles Cro/C1-type HTH domain profile. 88 142 IPR001387 -
Lan6g2249 145 SUPERFAMILY lambda repressor-like DNA-binding domains 83 139 IPR010982 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2249 Lan-Chr6 32740275 32740876 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR MBF1 Lan6g2249 MBF1 1.7e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2249 K03627 - cpap:110818571 228.794