Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2245 ATGGATTTAGAGGAGAAGTTCCTTGATAAAGTTTCCGGTATTCAAAGTCTTTCATCCAGTGTGCAAAGTACTCTAAAAAATGGTCATCCAGATGATGCTTCAAAGAGTTCACAACTCCTTCAGGGGTTCCTGAAATCTGGTCCAAAGAAAGAACATCTCCAAACGCACTCTGATAAGAACAAAAAGAAGCTCTCGTCGAAATAGATGAATGGAACTAAGTCGAAAAAACAGGACTCTAAAAAGGTTTCTTTTCTCAGCAATCAGTTTTCTAGGAAGCAACATCGGAAGGGGGAAAACCCCATGCGATTCATACCAGATCCTGATGTGCTTTCTGGTTTTGGACAATCAAACTCCTGGATCTGTAAAAATTCTGCTTGTAGAGCAGTTCTATCTAAAGATGACACATTTTGTAAAAGGTGCTCTTGTTGTATTTGCCACCATTTTGATGATAACAAGGACCCTAGTCTTTGGTTGGTATGCACATCTGAGTCTGCTCAAGGGAACTCTTGTGGGTTGTCTTGCCATATCGAGTGTGCCCTTCAACATGAAAAAGCGGGAGTTGTCGATCATGGGCAGCTAATGCAATTAGATGGCAGTTATTGTTGTGCATCCTGTGGCAAAGTGACTGGGATAATTGGATGTTGGAAGAAGCAGCTAAGTATAGCAAAAGATGCTCGGCGTGTAGATGTACTATGCTACAGGATATATTTGAGCTACCGGCTTCTGGATGGGACTTCAAGATTTAAAGAATTGCATGAGATGGTAAAAGAGGCAAATGCTAAACTAGAAAGTGAAGTGGGTCCGGTTAATGGGGTTTCTGCCAAGATGGCACGGGGCATTGTTAGCAGACTTCCTATTGCAAGTGATGTACAGAAACTATGCTCTCTTGCTATTGAGAAAGCTGATGAGTGGATGGCCACTGTTCCCGATGTAAACACAGAATCCAGAGAGGGATCGCTTCCTGCTGCCTGCAAGTTTGTTTTTGAAGAAGTAACAAATTCCTCGGTGAAAATCATTTTAATTCAAACGCCGAATGCATCTTCTGATCTCATTAAAGGGTACAAGCTCTGGTATTATAAGAGTAGGGATGAATCGCACACAGAAGATCCCGTTTGTGTGTTTCCCAAAATTCAGAGGAGGATTTTAATATCTGACCTCCAGCCTTGCACAGAATATACTTTTCGGATTATATCTTTTACGGATATCGGTGACCTGGGTCATTCTGAGGCAAAGTGTTTCACCAAGAGCATTGAAATATTGGAGAAGAATTCCTCTTCGGTGGTTGCTATGAATCATAAAAAGGAGAACCTTCAAACTGGAGGCAATTCTTCTGGCTCCAAAATGGAGCCTGATCCCAATATGGAAGACTCTAGATTTAAGGTTCGAGACCTTGGAAAATTTTTGCGTTTTGCATGGGCTCAAGAACAAGGTTGCTTGGAGGGGTTTTGCTGTGATGATAAGAAAGAGTGCTGTGGACAAAGTGAAATAGTCAAGCCTAGCGATCCAAAAGAGCAGTTACCTTCATTTTCGCGAGGCCTTGATTTAAATGTCGTTTCGATGCCTGATTTAAATGAAGAACTTACACCTCCTTTTGAGTCTTCCAGGGATGAAGACAATGGTTGCACATTGCAGCAGGCTGTTGAGGCAGACGATGCTGCTTCTCATGATCTAGAGAAAGCAAGATCACATGGCAGTGGTGATTCCCAAAACTGGACTCATGGTCCAACCGGAGAAGTTCCGGCTGTTGATTCTCGCATGGATGCATGCAAGAAAAGGGTAGCAAGTAGAAATGAAGAGACACCTGACTGTGACAGCACTTTGATAAATGGGTCTCCTTTGCGTGTACCCGATGGTTCATTATCCTTAGACGAGAAATTTGAGTACTGCGTGAAAGTTATTCGTTGGCTAGAATGTCAGGGTCATATCAAACAGGAGTTTAGGTTGAAGTTGCTGACATGGTTTAGTTTGAGGTCGACCGAGCAAGAACGAAGGGTGGTTAATACCTTCATTCAAACTCTGATTGATGATCCAAGTAGTTTAGCTGGGCAGCTAGTCGACTCATTTTCGGATATCATATCCAACAAGAGGCCAAGAAATGGGTTCTGTAATAAAGTTGTGGCATGA 2124 0.4247 MDLEEKFLDKVSGIQSLSSSVQSTLKNGHPDDASKSSQLLQGFLKSGPKKEHLQTHSDKNKKKLSSK*MNGTKSKKQDSKKVSFLSNQFSRKQHRKGENPMRFIPDPDVLSGFGQSNSWICKNSACRAVLSKDDTFCKRCSCCICHHFDDNKDPSLWLVCTSESAQGNSCGLSCHIECALQHEKAGVVDHGQLMQLDGSYCCASCGKVTGIIGCWKKQLSIAKDARRVDVLCYRIYLSYRLLDGTSRFKELHEMVKEANAKLESEVGPVNGVSAKMARGIVSRLPIASDVQKLCSLAIEKADEWMATVPDVNTESREGSLPAACKFVFEEVTNSSVKIILIQTPNASSDLIKGYKLWYYKSRDESHTEDPVCVFPKIQRRILISDLQPCTEYTFRIISFTDIGDLGHSEAKCFTKSIEILEKNSSSVVAMNHKKENLQTGGNSSGSKMEPDPNMEDSRFKVRDLGKFLRFAWAQEQGCLEGFCCDDKKECCGQSEIVKPSDPKEQLPSFSRGLDLNVVSMPDLNEELTPPFESSRDEDNGCTLQQAVEADDAASHDLEKARSHGSGDSQNWTHGPTGEVPAVDSRMDACKKRVASRNEETPDCDSTLINGSPLRVPDGSLSLDEKFEYCVKVIRWLECQGHIKQEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFCNKVVA* 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2245 706 MobiDBLite consensus disorder prediction 19 43 - -
Lan6g2245 706 CDD FN3 324 403 IPR003961 GO:0005515
Lan6g2245 706 PANTHER VIN3-LIKE PROTEIN 2-RELATED 51 704 IPR044514 GO:0010048|GO:0040029
Lan6g2245 706 SUPERFAMILY Fibronectin type III 325 403 IPR036116 GO:0005515
Lan6g2245 706 MobiDBLite consensus disorder prediction 19 102 - -
Lan6g2245 706 MobiDBLite consensus disorder prediction 551 584 - -
Lan6g2245 706 MobiDBLite consensus disorder prediction 49 79 - -
Lan6g2245 706 Gene3D Immunoglobulins 316 416 IPR013783 -
Lan6g2245 706 ProSiteProfiles Fibronectin type-III domain profile. 319 418 IPR003961 GO:0005515
Lan6g2245 706 Pfam PHD - plant homeodomain finger protein 120 238 IPR032881 -
Lan6g2245 706 PANTHER VIN3-LIKE PROTEIN 1 51 704 - -
Lan6g2245 706 CDD PHD_VIN3_plant 140 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2245 Lan-Chr6 32706292 32713595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2245 116 699 PHD Gene Family AT3G24440 49.155 0.0 534
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2245 - - gmx:100780157 1195.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0273 18 4003869 4010793 Lan6g2245 6 32706292 32713595 LSH
Lan6g2245 6 32706292 32713595 Lan10g0405 10 2833643 2840751 PCT
Lan10g0405 10 2833643 2840751 Lan6g2245 6 32706292 32713595 PCT