Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2238 ATGCCATTAGCTCCGGCTCACTCTTCTCCGCCACCGCCCGCCTCGACCACTCATCCGTCAAAACCTCCGCCATCTCCGTCATATACCCTACCGGCGGCCAGCGCGAGCGTATCCACCGGATTGGTGGTGGGAGTCCTGGTTGGGTCGGTGGTGTTGTTGTTGGCGTTGAGCACTATTATGTGCATTTGTTGCATGAAAAGGAAGAGAACACGCGATGAAGGGCAACACTATCCTCCTCTTACTCCACAATCCCAACACAAAGTTGATCAATTAGGCGTTCCCCTGCATCAATTGCAACGTAATGCTTCCGCTCTGTCAGATCATGGAATCCACCCGATGATGCCTAAGCCATCTCCTCTGACGTCTATTGCACCGAGTAGACAATCGTCCCTATCGTCACAATATAATTATGCGCAGCCTCCACCACCTCTACCCTTTATTCACAGCATCGGCTCTGGATCGAACTTTTCGGCTGCCGAATCACTCTCAAAGTCTTCTCAAGCTCTTTCATTGGGCTTTGTGAAGAGCACATTTTCATTTGAGGAGTTGATGTGTGCGACTGATGGCTTCTCTGATGCCAACCTCCTTGGATCGGGTGGGTTCGGGTATGTGCACAGAGGACTTCTTGCCAATGGCAAGGAGGTGGCTGTCAAGCAGCTTAAGTCTGGAAGCAGGCAAGGGGAGCGCGAATTTCAAGCCGAACTTGAGATAATTAGCCGCGTTCATCACAAACATCTTGTTTCTTTGGTGGGATACTGCATCACTGGGACTCAGAGGCTGCTTGTTTATGAATTCATTCCCAACAATACATTGGAATTCCATTTACATGGAAAAGGAAGACCTACAATGGATTGGCTTACGAGAATGCGAATTGCATTAGGATCTGCAAAAGGATTGGCCTATCTTCATGAGGATTGTCATCCTAAGATCATCCATCGCGATATCAAAGCTGCTAACATCCTTCTGGACTTCAAGTTTGAAGCAAAGGTTGCGGATTTTGGGCTTGCAAAGATTTCTTCTGAATCCAATACTCATGTTTCCACTCGAGTGATGGGGAATTTTGGGTATCTTGCTCCAGAATATGCTTCTACTGGAAAACTTACAGACAAATCTGATGTGTTTTCCTACGGAATCATGCTACTCGAGTTAATAACTGGAAAACGCCCGGTTGATAAAAATTATTCTTTCACAGACAGTTTGGTAGACTGGGCTAGACCTTTGCTCACACATTCTTTGGAAGAGAATGATTTCGATTCGCTGGTTGACCCAAGGCTCCAGAACGAGTTTGATCGTCACGAGATGGCTCGCATGGTGGCATGTGCTGCAGCTTGCGTATGTCATTCAGCGAAACGTCGACCAAGGATGAGCCAGGTTGTTCGTGCTCTGGAAGGAGACGTGTCTCTATCAGATCTTAGTGAAAAAATTGTACCTGGGAACACCACTCCATACAGTTCATATGATAGCTCAGATTATGACCCCTCACAATACAAGGAGGACATGAAAAAGTTCCGAAAAACAGCCCTCGAGGGAACTCATGAGTATGGTGCCAGCAGTGGGTACAGTGGGACAAGTGATTATGGTTTATATCCATCTGGATCAAGCAGTGAAGCGCAGAGCCGGCGAAACACTATGGAAATGAATAAATTGAATAGAAAAGGTTTCAGTCCTGGAAAATCTTGA 1680 0.4685 MPLAPAHSSPPPPASTTHPSKPPPSPSYTLPAASASVSTGLVVGVLVGSVVLLLALSTIMCICCMKRKRTRDEGQHYPPLTPQSQHKVDQLGVPLHQLQRNASALSDHGIHPMMPKPSPLTSIAPSRQSSLSSQYNYAQPPPPLPFIHSIGSGSNFSAAESLSKSSQALSLGFVKSTFSFEELMCATDGFSDANLLGSGGFGYVHRGLLANGKEVAVKQLKSGSRQGEREFQAELEIISRVHHKHLVSLVGYCITGTQRLLVYEFIPNNTLEFHLHGKGRPTMDWLTRMRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKISSESNTHVSTRVMGNFGYLAPEYASTGKLTDKSDVFSYGIMLLELITGKRPVDKNYSFTDSLVDWARPLLTHSLEENDFDSLVDPRLQNEFDRHEMARMVACAAACVCHSAKRRPRMSQVVRALEGDVSLSDLSEKIVPGNTTPYSSYDSSDYDPSQYKEDMKKFRKTALEGTHEYGASSGYSGTSDYGLYPSGSSSEAQSRRNTMEMNKLNRKGFSPGKS* 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2238 559 MobiDBLite consensus disorder prediction 513 559 - -
Lan6g2238 559 MobiDBLite consensus disorder prediction 1 32 - -
Lan6g2238 559 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 5 545 - -
Lan6g2238 559 SUPERFAMILY Protein kinase-like (PK-like) 166 462 IPR011009 -
Lan6g2238 559 MobiDBLite consensus disorder prediction 107 126 - -
Lan6g2238 559 SMART serkin_6 190 450 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2238 559 Gene3D Transferase(Phosphotransferase) domain 1 266 474 - -
Lan6g2238 559 ProSitePatterns Protein kinases ATP-binding region signature. 196 218 IPR017441 GO:0005524
Lan6g2238 559 Gene3D Phosphorylase Kinase; domain 1 152 265 - -
Lan6g2238 559 ProSitePatterns Serine/Threonine protein kinases active-site signature. 310 322 IPR008271 GO:0004672|GO:0006468
Lan6g2238 559 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 5 545 - -
Lan6g2238 559 ProSiteProfiles Protein kinase domain profile. 190 468 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2238 559 Pfam Protein tyrosine and serine/threonine kinase 195 462 IPR001245 GO:0004672|GO:0006468
Lan6g2238 559 MobiDBLite consensus disorder prediction 516 544 - -
Lan6g2238 559 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2238 Lan-Chr6 32647614 32654708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2238 12 543 Trihelix Transcription Factor Family AT1G70460 47.059 2.65e-150 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Lan6g2238 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2238 - - gmx:100781944 695.656
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0383 10 2617820 2622051 Lan6g2238 6 32647614 32654708 LSH
Lan3g0308 3 2092921 2098081 Lan6g2238 6 32647614 32654708 LSH