Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2230 ATGTCTGTGCCATTAGAGCAAAACTATGCAGCCTTATCATCAGAGATTCTAACAATGGAAAAAACCTCTGAAACATTTTCTCAAAGAGCTAAAACCACAACATGTAGCAGTGGCTTAAACCTTAAGGCAACTGAACTGAGACTAGGCTTGCCTGGTTCTGAGTCACCAGAGAGAGATGAGAATAATGTTGTTGTGTACCCTTTAGCCATGCACAACAAGTGTTTTGTGTCTGGTGCCAAAAGGGGTTTCTCTGATGCCATTGATAGTGGTTCTGGCAAGTGGGTTCTCTCTGGAAATGGTGGATCTGAAATGGGTTTGGGTAAAGATAGTAACTTGTTTTCTCCTAGGGGTGTTAGTGTTACTGCTGCTAAGGTTCTTGTTGGAGCTGAGTGTAGTAACCAACAAAAAGTATCTGTTTTGAAAGATCAAGTTTCTCATACTTCAAAACCATTGAATGAGAAGAAGCCTCAGATATCTGCTATTGCTGCAAAGGAACAAGTTGTAGGATGGCCACCAATCTGTTCTTTCCGGAAGAATTCAATGACGACTCAGCCTCAAAAGAATGATGATGATGTAGAAACCAAGTCTGGTTGCCTTTATGTAAAAGTTAGCATGGATGGTGCTCCTTATTTGAGGAAAGTGGATCTCAAAAACTTCGGCACTTACAGGGAACTATCTTCAGCACTGGAAAAGATGTTTAGTTGTTTTACAATCAGTCAATGTGACTCTCATAAGTTGAGTGAAAGTAGATTGATGGATCTACTCCACGGTTCGGAATATGTGCTCACCTATGAAGACAAGGATGGTGATTGGATGCTAGTTGGAGATGTTCCATGGGAGATGTTCATCGACTCTTGCAAGAGATTGAGGATAATGAAGAGTTCTGAAGCAATTGGACTAGCACCAAGAGCCATGGAAAAGAGCAGAAGTCGGAACTAG 939 0.4143 MSVPLEQNYAALSSEILTMEKTSETFSQRAKTTTCSSGLNLKATELRLGLPGSESPERDENNVVVYPLAMHNKCFVSGAKRGFSDAIDSGSGKWVLSGNGGSEMGLGKDSNLFSPRGVSVTAAKVLVGAECSNQQKVSVLKDQVSHTSKPLNEKKPQISAIAAKEQVVGWPPICSFRKNSMTTQPQKNDDDVETKSGCLYVKVSMDGAPYLRKVDLKNFGTYRELSSALEKMFSCFTISQCDSHKLSESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCKRLRIMKSSEAIGLAPRAMEKSRSRN* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2230 312 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 304 IPR003311 GO:0005634|GO:0006355
Lan6g2230 312 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 23 304 - -
Lan6g2230 312 Pfam AUX/IAA family 44 303 IPR033389 -
Lan6g2230 312 Gene3D - 192 306 - -
Lan6g2230 312 ProSiteProfiles PB1 domain profile. 198 294 IPR000270 GO:0005515
Lan6g2230 312 SUPERFAMILY CAD & PB1 domains 196 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2230 Lan-Chr6 32604263 32607633 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2230 174 306 B3 DNA Binding Superfamily AT1G19850 30.827 8.23e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan6g2230 AUX_IAA 1.4e-82 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2230 K14484 - gmx:100803754 438.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2230 6 32604263 32607633 Lan10g0373 10 2536347 2539856 PCT
Lan6g2230 6 32604263 32607633 Lan3g0298 3 2016148 2018760 PCT
Lan10g0373 10 2536347 2539856 Lan6g2230 6 32604263 32607633 PCT
Lan3g0298 3 2016148 2018760 Lan6g2230 6 32604263 32607633 PCT