Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2191 ATGACTAATCCCTACTACTCCAATGACCCCAATGGTTGGTTTGACCTAAATTCTCCAAACTTTTTCTCTTCCTCATCATCATCATCACCCTCATGTTCCAACCCACCATTCTATTTCCCTTCTAGTTACCATAATCATAACTTCACAAGTGGCATGATCTCTTTTACTCATCATCATCATAAATCTTGTCATCATGATCCATCATCACCTCCTCCAAGAGAAGCTCTTCCACTCCTTAACCTAAGCCCTAGAAAAGGTGAGGATCTTGAAACATCCTTTAGTTCCATGGAAGTGGAAAACAACAACAAAGAATCTATAATCTCTTTGGATCATGAAGATGCTAGTGTAACTGTGGCTTTGCACTTAGGGCTCCCAAGCACAACAAGTACAACTTCTGTTGATTTAGCTTCAAATATATTATCCACCACAGAGATTTCATCAGAGAAAGATAATGAAAAGGTTACTGTTGCTTCTACTGAATATCCATCAAGTAGAATTAATAGGGGTCAGTATTGGATCCCTACACCATCTCAAATTCTGATTGGTCCAACACAGTTTTCATGCCCTCTTTGTTTCAAGACTTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAGGGACCAGAATCTCTAAGAGGAACACAACCAACAGCAATGCTTAGACTCCCTTGCTTTTGCTGTGCACCAGGGTGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGAACCCTTCAAACTCATTACAAGAGAAAGCATGGGATCAAACCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGAGGTGATTGGAGAACTCATGAGAAGAATTGTGGGAAGCTTTGGTATTGCTCTTGTGGCTCTGATTTCAAGCATAAAAGGTCTCTTAAGGATCATATCAAAGCATTTGGAAATGGGCATAAAGCTTATGGAATAGATTGTCTTGATCAAGATGATGAAGGTGGCTCTGAAATTGAGCATGAAAGTGAGTCTTTTCATCGTAGTTGA 1050 0.399 MTNPYYSNDPNGWFDLNSPNFFSSSSSSSPSCSNPPFYFPSSYHNHNFTSGMISFTHHHHKSCHHDPSSPPPREALPLLNLSPRKGEDLETSFSSMEVENNNKESIISLDHEDASVTVALHLGLPSTTSTTSVDLASNILSTTEISSEKDNEKVTVASTEYPSSRINRGQYWIPTPSQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCFCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEGGSEIEHESESFHRS* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2191 349 SUPERFAMILY beta-beta-alpha zinc fingers 252 290 IPR036236 -
Lan6g2191 349 ProSiteProfiles Zinc finger C2H2 type domain profile. 186 213 IPR013087 -
Lan6g2191 349 MobiDBLite consensus disorder prediction 59 79 - -
Lan6g2191 349 ProSitePatterns Zinc finger C2H2 type domain signature. 188 208 IPR013087 -
Lan6g2191 349 Gene3D Classic Zinc Finger 230 319 - -
Lan6g2191 349 PANTHER ZINC FINGER PROTEIN WIP2 2 345 IPR043584 GO:0003700|GO:0010468
Lan6g2191 349 Gene3D Classic Zinc Finger 185 208 - -
Lan6g2191 349 PANTHER TESTA 1 PROTEIN, PUTATIVE-RELATED 2 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2191 Lan-Chr6 32286024 32288783 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2191 73 340 C2H2 Transcription Factor Family AT3G57670 61.311 1.23e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g2191 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2191 - - gmx:100789416 499.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2191 6 32286024 32288783 Lan3g0269 3 1809026 1812052 LSH