Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2187 ATGGAGTCAGATCCTCAGCAAAACAATTCTTCATCTGGTTTAACACGTTATAAATCAGCACCAAGTTCATATTTTACCAACATCATTGACAAGGATTTCTATCAGCACATTTTCAACCACCCTTCTAGCCCTGAAACAGAACAAATCTTCTCAAGATTTATGAATAGTATAGGTGGTGAAAATGATGATGTTACTCCTGCAGCAGAAGAAGAAGAAGAAGATTCACTTCCTCATAATTTCTCACCAGTGAAAGAAGAGATTATTATTAACCAACAGGTAAATTATGAACCTGTGGTGTGGAAAGAGCAACAACAGCATTGTGATATTAATAGTAATTATTCTTCTGATGTTCATGGTTTTTATCAAAGTTCTGCAAGACCACCTTTGCCAAATCAAAACCTTAATTCAGGTATGGATGGAACATATTCAGTTGGTGCTGTTAATAGGTTGCAGCAGATGAAAACTGGTTCTAGGAATAATCTTATTAGGCATAGTAGTTCACCTGCAGGACTATTTTCCCAAATCAACATTGAAAATGTGTATGCTGGTATCAGAGGCATGGGAAATAATAAAGGAGCAGCTAGTAGTAACACTATGGAAGAAGCAAAATTTTGTAATGCAAGAAAGCTGAAGAATCCACCAAATTACTCATCAGGGTTAATGTCAGCAATTGCTGAAGTTGAGGACAAAGGAAACAGAGAAAACAATGAAGAAAGTGAAGGCTTTGCTGAAAATCATGGTAATGATTTTATCCAAGGCTACAATGCTGGTACTTGGGATGATTCACAAATCATGCCTAATAATGTTACTGCTCTAAAAAGACACAGAAATGATGAGTTGAAACCATTTGGTGGTTTAAATGCAACTGAAACTCAGAATGAAAGAGAAGGACAATCTTCTTTGGCTCATCAATTGAGTATGCCAAATACTTCATCTGAAATGGCAGCAATTGAGAAGTTCCTACAGTTTTCAGATTCTGTTCCATGCAAAATTCGTGCCAAACGAGGCTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATTAGTGAGCGAATGAGGAAATTACAAGATTTGGTTCCAAACATGGACAAGCAAACAAACACAGCAGACATGTTGGATTTGGCTGTTGATTACATCAAAGACCTTAAAAAAGAAGTTCAGACTCTTTCAGAATGTCAGTCTAAGTGTACGTGTTCACACAAGCATGAGCAATAA 1230 0.3699 MESDPQQNNSSSGLTRYKSAPSSYFTNIIDKDFYQHIFNHPSSPETEQIFSRFMNSIGGENDDVTPAAEEEEEDSLPHNFSPVKEEIIINQQVNYEPVVWKEQQQHCDINSNYSSDVHGFYQSSARPPLPNQNLNSGMDGTYSVGAVNRLQQMKTGSRNNLIRHSSSPAGLFSQINIENVYAGIRGMGNNKGAASSNTMEEAKFCNARKLKNPPNYSSGLMSAIAEVEDKGNRENNEESEGFAENHGNDFIQGYNAGTWDDSQIMPNNVTALKRHRNDELKPFGGLNATETQNEREGQSSLAHQLSMPNTSSEMAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTADMLDLAVDYIKDLKKEVQTLSECQSKCTCSHKHEQ* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2187 409 MobiDBLite consensus disorder prediction 56 77 - -
Lan6g2187 409 Pfam Helix-loop-helix DNA-binding domain 342 387 IPR011598 GO:0046983
Lan6g2187 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 337 387 IPR011598 GO:0046983
Lan6g2187 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 406 - -
Lan6g2187 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 400 IPR036638 GO:0046983
Lan6g2187 409 SMART finulus 343 393 IPR011598 GO:0046983
Lan6g2187 409 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 7 406 - -
Lan6g2187 409 Gene3D - 339 401 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2187 Lan-Chr6 32238051 32242520 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2187 6 404 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 38.061 1.43e-70 225
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g2187 HLH 2.3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2187 - - lang:109358074 525.013