Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2175 ATGGATTCCGATGATGATATGCACGACGCCAACGATGTGGACTCACTCGATGACGATTTCTACAGTGGCGAAACTGAAGATGCTCCCATTGATTATTACAGCGACTACGATGATGATGATGATGATGATGGTAATGGTAATGATGATGACGATGATTACTTTGACGACGGTGATGATTCCGATAGGATCCCCGAGCAAAATTTCACCATATTGAAGGAATCGGATATCCAGCAAAGGCAGGAAGATGACATCAATAGAGTAGCTGCGGTTCTTTCCATATCACGGGTTTCTGCGAGCATCGTACTTCGTAATTACAATTGGAGTGTCACTAAAGTGCATGATGCATGGTTTGCTGATGAAGATCAAGTCCGAAAGACAGTTGGTTTGTTGGAGAAACCTGTTGTCCAGCATTCCAATACTAGAGAGTTTACTTGCGGCATCTGTTTTGAAACCTATCCTCGTGCTAGGATTGAAACTGCTTCTTGTGGACATCCCTACTGTATTTCATGTTGGGAAGGATATATTAGCACATCAATTAATGACGGCCCTGGATGTTTGATGCTGAGATGTCCTGATCCCACTTGTGGTGCTGCTGTTGGTCAAGATATGATTAATCTCTTAGTATCTGATGAAGACAAAGAGAAGTATGCTTGTTACCTTCGTCGGTCTTACATTGAAGACAATAAGAAGACCAAATGGTGTCCTGCTCCAGGTTGTGAGTATGCAGTTACTCGTGATGCTGGTAGTGGAAATTATGATGTATCTTGCCTCTGTTCATATAGCTTTTGCTGGAATTGCATTGAAGAGGCTCATCGTCCGGTGGATTGTGGCACTGTGGCAAAGTGGATTTTGAAAAACAGTGCAGAATCTGAAAACATGAACTGGATACTTGCTAACTCAAAGCCTTGTCCCAAATGCAAGCGACCGATTGAAAAAAATCAAGGATGCATGCACATGACTTGTACACCACCTTGTAAATATGAATTCTGCTGGTTATGCCTTGGTGTATGGTCAGACCATGGTGAAAGGACTGGTGGTTTCTATGCTTGCAACCGTTATGAGACAGCTAAACAAGAGGGGGTGTATGATGAAACTGAAAGAAGAAGAGAAATGGCAAAGAATTCGCTGGAGAGGTATACACATTATTATGAACGGTGGGCCAGCAACCAATCTTCAAGGCAAAAAGCTCTTTCAGATCTGCACCAGATGCAAACTGTTAATATTGGGAAGCTTAGTGACACACAGTGTCAGCCTGAGTCACAGCTTAAGTTCATCACCGAGGCTTGGCTACAAATAGTTGAATGCAGACGCGTTCTGAAGTGGACGTATGCATATGGGTACTATTTACCTGATCATGAACATGCTAAAAAACAGTTCTTTGAGTACCTACAAGGTGAGGCAGAATCTGGTTTGGAAAGACTTCATCAATGTGCCGAAAAGGAACTGCAGGTATTCCTCAATGCTGAAGGTCCATCAATAGAATTCAATGACTTCCGCACAAAACTAGCAGGATTGACCAGTGTGACTAGAAACTACTTTGAGAATTTGGTTAGGGCATTAGAAAAAGGTCTATCTGATGTGGGTAGTAATGGAGCTAATTCAAGCGAAGCAACGAGCTCGAAAAATGCTGCAGGAGGCAGTAAGAGAGGCGGAAGAGGAAAGGGAACCATTCGAGCTAGCATGTCCAGCAAAACGACTTCTGATAATCTTTGGTCTTGTGAACATTGTACCTATGCAAATGCCAAATCTGCCACTACATGTCAGATGTGCAATCAACAGCGTCGATGA 1788 0.4295 MDSDDDMHDANDVDSLDDDFYSGETEDAPIDYYSDYDDDDDDDGNGNDDDDDYFDDGDDSDRIPEQNFTILKESDIQQRQEDDINRVAAVLSISRVSASIVLRNYNWSVTKVHDAWFADEDQVRKTVGLLEKPVVQHSNTREFTCGICFETYPRARIETASCGHPYCISCWEGYISTSINDGPGCLMLRCPDPTCGAAVGQDMINLLVSDEDKEKYACYLRRSYIEDNKKTKWCPAPGCEYAVTRDAGSGNYDVSCLCSYSFCWNCIEEAHRPVDCGTVAKWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHMTCTPPCKYEFCWLCLGVWSDHGERTGGFYACNRYETAKQEGVYDETERRREMAKNSLERYTHYYERWASNQSSRQKALSDLHQMQTVNIGKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPDHEHAKKQFFEYLQGEAESGLERLHQCAEKELQVFLNAEGPSIEFNDFRTKLAGLTSVTRNYFENLVRALEKGLSDVGSNGANSSEATSSKNAAGGSKRGGRGKGTIRASMSSKTTSDNLWSCEHCTYANAKSATTCQMCNQQRR* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2175 595 CDD RING-HC_RBR_TRIAD1_like 145 195 - -
Lan6g2175 595 Pfam Ariadne domain 363 489 IPR045840 -
Lan6g2175 595 MobiDBLite consensus disorder prediction 1 62 - -
Lan6g2175 595 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Lan6g2175 595 Gene3D - 272 527 - -
Lan6g2175 595 SUPERFAMILY RING/U-box 214 283 - -
Lan6g2175 595 ProSiteProfiles Zinc finger RING-type profile. 145 189 IPR001841 -
Lan6g2175 595 Pfam IBR domain, a half RING-finger domain 214 276 IPR002867 -
Lan6g2175 595 Pfam IBR domain, a half RING-finger domain 293 340 IPR002867 -
Lan6g2175 595 ProSiteProfiles Zinc finger RanBP2 type profile. 567 595 IPR001876 -
Lan6g2175 595 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 543 IPR031127 GO:0004842|GO:0016567
Lan6g2175 595 Gene3D - 564 595 - -
Lan6g2175 595 SMART ibrneu5 214 276 IPR002867 -
Lan6g2175 595 SMART ibrneu5 280 350 IPR002867 -
Lan6g2175 595 SMART zf_4 569 593 IPR001876 -
Lan6g2175 595 ProSitePatterns Zinc finger RanBP2-type signature. 571 590 IPR001876 -
Lan6g2175 595 MobiDBLite consensus disorder prediction 526 563 - -
Lan6g2175 595 MobiDBLite consensus disorder prediction 527 545 - -
Lan6g2175 595 SUPERFAMILY RING/U-box 140 226 - -
Lan6g2175 595 MobiDBLite consensus disorder prediction 1 59 - -
Lan6g2175 595 ProSiteProfiles TRIAD supradomain profile. 141 354 IPR044066 -
Lan6g2175 595 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 543 - -
Lan6g2175 595 SUPERFAMILY Ran binding protein zinc finger-like 567 594 IPR036443 -
Lan6g2175 595 SUPERFAMILY RING/U-box 295 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2175 Lan-Chr6 32146810 32155445 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2175 17 594 ARIADNE family AT1G65430 69.310 0.0 827
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2175 K11968 - gmx:100810427 1058.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2175 6 32146810 32155445 Lan3g0260 3 1698556 1706088 LSH
Lan6g2175 6 32146810 32155445 Lan7g0197 7 1194288 1200430 PCT
Lan6g2175 6 32146810 32155445 Lan13g0288 13 1853329 1859752 PCT
Lan7g0197 7 1194288 1200430 Lan6g2175 6 32146810 32155445 PCT
Lan13g0288 13 1853329 1859752 Lan6g2175 6 32146810 32155445 PCT