Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2170 ATGATGAATTTGAACCAATGGGGTTTTGTATTTGAGCTTATGGTTTTCTCATACTTGTGGTCTCTAGTTTCAAGTCTTGGTTCCATGTCTCTAATGGCTACCTCTTATGGTGACCAAGGTTCTGTGGTTTGTGCATTGAAATCAGATGGGTCTCATACTGTGAACTGTTATGGAAAAAACTCAGCCATAATCTATGGAACACAGCCACATTTACAATTCTTCGGTCTAAGTGCTGGCGATGGCTTTGTTTGTGGGCTTCTAATGAGTTCTAATCAACCCTATTGTTGGGGTAGTAGTAGCCATATTCAGATGGGTGTGCCTCAACCTATGATCAAAGGAGCTGAGTACCTAGAAATCAGTGCTGGTGATTACCATGTTTGTGGATTGAGGAAACCATTGAAGGGAAGGCAAAGGAACACTTCTTTTGTTGATTGTTGGGGCTATGAGATGACCAAGAACTATGTGTTTGATGGGCAGATTCAATCGATTTCATCCGGTTCCGAATTCAATTGCGGCTTGTTTTCTCAGAATAGGACTTTGTTTTGCTGGAGTGATGAGCCTGGTGGAAAAAGTATTGTTAATCAGATTCCGAAAGACAATAGGTTCCAGAAGGTTGCTTGTGGTGGATTACATGTATGTGGGATCTTAGAAGGTGTGAATTCTAAAACTCTTTGTTGGGGAAGGAGTTTGAATATGGAGGAAGAGATTTCATTGATACATTCAGGACAAGGACAAGGTGATATTGCTTTGGTTCCGAATGTTTCTATGCTTTCTGTAGTAGGAGGAAAGTTTCATGCTTGTGGTATTAAGAGCTATGATCATGGAGTTATATGTTGGGGCTCTAGTTTAAGAGGAAGTACTCTACCACCTAGTGAGATTAAGGTGTTTGAGCTTGCTGCTGGGAACTACTTTACCTGTGGAATAATTGCTGCGAAATCTCTTCGACCGGTTTGTTGGGGTACTAATTTCCCTACCTCTCTTCCAATTGCTGCATCACCAAGAATGTGTAGGTCTACTCCATGTCCTCCAGATTACTATGAAATGGATCAGCAGAAGGGTCTATGCAATTCACCAGATTCTCATCTTTGCATACCTTGCAGCAGTGATTGTCCGTCCGAAATGTATCGAAAAAGTAAATGCACCATGACTTCTGATAGAGTATGTGAATATAATTGTACTGCTTGTTCCTCACCTGCATGCTTCTCCAATTGCTCGGTTTTATATACCAATCCTGTTCCTTCTGCTGATTTGAAGAAGAAAAATGAAAGGATTTGGTCTCAGCAGTTGCCGATTATTGTTGCTGAGATAGTTTTTGTACTTTTCATAGTTTGTGTTGTATCTATATTGGCGGTTTTGTATGTTAGATATAGGCTAAGAAATTGCAAGTGTTCGGCAACAACAAGGCCAAAGGAGAAGAGTTCTTCACTTCAAAATGAGAACAAGATAAGGCCAGACATGGAGGAGTTAAAGATTAGGAGGGCACAGATGTTCACATATGAGGAACTCGAAAGTGCAACCGGTGGATTCAAAGAAGAATCCATAGTTGGGAAGGGAAGTTTCTCTTGTGTGTTCAAGGGAGTTTTGAAAGATGGCACTGTTGTTGCTGTTAAAAGGGCCATAATGTCTCCCTCTCCCAACATGCCGAAAAACTCGAAAGAGTTTCACACTGAGCTTGATTTACTCTCAAGGTTGAACCATGCTCACTTGCTTAACCTACTAGGCTATTGTGAAGAAGGTGGAGAAAGACTCCTAGTTTATGAATACATGGCTCATGGATCCTTGCATCAATACCTACATGGCAAAAACAAGGACTTGAAAGAGCAATTGGATTGGATCAGGAGGGTAACAATTGCAGTCCAAGCTGCTCGCGGAATCGAATATTTGCACGGCTATGCATGTCCACCAGTGATCCATAGAGACATAAAATCTTCAAACATCCTCATTGACGAAGAACACAATGCAAGGGTCGCTGATTTCGGCTTATCATTGCTTGGTCCTGCAGATAGTAGCTCTCCACTTGCAGAACTACCAGCTGGTACTCTCGGTTACCTCGATCCCGAATACTATAGGCTTCATTATCTAACAACAAAGTCCGATGTATACAGCTTCGGCGTTCTACTATTGGAGATCCTAAGTGGTCGAAAAGCCATTGACATGCAATATGAAGAAGGGAACATAGTTGAATGGGCAGTACCTTTGATCAAATCAGGAGATATACCTGCAATATTGGATCCAATTCTGAAACCTCCACCCGATATCGAGGCCTTGAAAAGGATTGCAAATGTTGCATGTAAGAGTGTGAGAATGAGAGGAAAAGATAGGCCTTCAATGGGAAAAGTAACAACAGCATTGGAAAGAGCACTAGCACAATTATTGGGTAGTCCTTGCATTGATCAACCAATTTTGCCAACTGAGGTAGTTTTAGGAAGCAACAGACTTCACAAGAAACCATCTCAAAGGTCTTCAAAAGGGTCAGCAAATTCAGAAGTTGATGTGCCAGAAAGTGAGGATCAAAGGTTTGAGTTTAGAGCACCATCTTGGATAACTTTTCCAAGTGTTACTTCATCTCAAAGGAGAAAATCTTCAGGCTCAGAAGTTGAAGTTTATGGTAAAAATAATAATGCAGCAGCATCAGAAGGAAGGAATTTTGGATCAAATGTTGGAGTTAGTGGTAGTGGTGGTGATGTTTTGAGAAGCCTTGAGGAAGAGATTGGTCCTGCTTCTCCAAGAGAGAGCTTGTTCTTGCAGCACAATTTCTAA 2760 0.4134 MMNLNQWGFVFELMVFSYLWSLVSSLGSMSLMATSYGDQGSVVCALKSDGSHTVNCYGKNSAIIYGTQPHLQFFGLSAGDGFVCGLLMSSNQPYCWGSSSHIQMGVPQPMIKGAEYLEISAGDYHVCGLRKPLKGRQRNTSFVDCWGYEMTKNYVFDGQIQSISSGSEFNCGLFSQNRTLFCWSDEPGGKSIVNQIPKDNRFQKVACGGLHVCGILEGVNSKTLCWGRSLNMEEEISLIHSGQGQGDIALVPNVSMLSVVGGKFHACGIKSYDHGVICWGSSLRGSTLPPSEIKVFELAAGNYFTCGIIAAKSLRPVCWGTNFPTSLPIAASPRMCRSTPCPPDYYEMDQQKGLCNSPDSHLCIPCSSDCPSEMYRKSKCTMTSDRVCEYNCTACSSPACFSNCSVLYTNPVPSADLKKKNERIWSQQLPIIVAEIVFVLFIVCVVSILAVLYVRYRLRNCKCSATTRPKEKSSSLQNENKIRPDMEELKIRRAQMFTYEELESATGGFKEESIVGKGSFSCVFKGVLKDGTVVAVKRAIMSPSPNMPKNSKEFHTELDLLSRLNHAHLLNLLGYCEEGGERLLVYEYMAHGSLHQYLHGKNKDLKEQLDWIRRVTIAVQAARGIEYLHGYACPPVIHRDIKSSNILIDEEHNARVADFGLSLLGPADSSSPLAELPAGTLGYLDPEYYRLHYLTTKSDVYSFGVLLLEILSGRKAIDMQYEEGNIVEWAVPLIKSGDIPAILDPILKPPPDIEALKRIANVACKSVRMRGKDRPSMGKVTTALERALAQLLGSPCIDQPILPTEVVLGSNRLHKKPSQRSSKGSANSEVDVPESEDQRFEFRAPSWITFPSVTSSQRRKSSGSEVEVYGKNNNAAASEGRNFGSNVGVSGSGGDVLRSLEEEIGPASPRESLFLQHNF* 920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2170 919 ProSiteProfiles Protein kinase domain profile. 509 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2170 919 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 91 132 IPR000408 -
Lan6g2170 919 Gene3D - 196 342 IPR009091 -
Lan6g2170 919 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN ACR4 7 919 - -
Lan6g2170 919 Gene3D Transferase(Phosphotransferase) domain 1 589 792 - -
Lan6g2170 919 Pfam Protein tyrosine and serine/threonine kinase 512 717 IPR001245 GO:0004672|GO:0006468
Lan6g2170 919 Gene3D - 33 195 IPR009091 -
Lan6g2170 919 MobiDBLite consensus disorder prediction 812 837 - -
Lan6g2170 919 ProSiteProfiles TNFR/NGFR family cysteine-rich region domain profile. 340 388 IPR001368 GO:0005515
Lan6g2170 919 SMART serkin_6 509 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2170 919 PANTHER RECEPTOR-LIKE KINASE 7 919 - -
Lan6g2170 919 Gene3D Phosphorylase Kinase; domain 1 479 588 - -
Lan6g2170 919 SUPERFAMILY RCC1/BLIP-II 41 285 IPR009091 -
Lan6g2170 919 ProSitePatterns Serine/Threonine protein kinases active-site signature. 636 648 IPR008271 GO:0004672|GO:0006468
Lan6g2170 919 ProSitePatterns Protein kinases ATP-binding region signature. 515 537 IPR017441 GO:0005524
Lan6g2170 919 SUPERFAMILY Protein kinase-like (PK-like) 489 784 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2170 Lan-Chr6 32114439 32133021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2170 6 919 Receptor kinase-like Gene Family AT3G59420 65.401 0.0 1190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CR4L Lan6g2170 PK_Tyr_Ser-Thr 5.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2170 - - gmx:100797455 1406.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2170 6 32114439 32133021 Lan10g0316 10 2083961 2087542 LSH