Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2168 ATGAAGATTCAGTGTGATGTGTGTGAGAATGCACCAGCAACAGTGATTTGTTGTGCAGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCAAATAAGCTTGCAAGTAAGCATCAGAGACTTCTTCTTGAAACTCTATCAAAGAAGCTTCCAAGATGTGACATATGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTCTTTTGTCAGGATTGCGATGAACCGATTCACTCAGCTGGCAGCATTTCTGCAAGCCACCAGCGCTTCCTTGCTACTGGTATCCGAGTTGCGTCGAGTTCTAATTGCACCAAAAACAACGAAGAAAGTCACTCTGAGCCATCTAACAGGAATTCCGAACAAGTTTCTGTGAAAGTTCCGTCTCAGCAAGTGCCTACCTTCACTTCTGCTTGGGCTGTTGATGACTTATTGGACATGGCAGACTTTGAATCACATGACAAAAAGGAATCCTTGCAGTTTGGAGAGCTGGAATGGCTCGAAGAAGTTGGTCTTTTTGGTGAACAATTTCCTCATGAAGCTTTGGCTGCAGCTGAAGTCCCTCAGCTTCCAGCAACACATACTAGCAGCAATGTTGTCTCATACAGAACCTCAAAGTCCTACTTGTCTCACAAAAAGCCTAGGATTGAAGTCCGATATGATGATGACGACGAGTTCTTCACCGTGCCTGATCTTGGCTGA 720 0.4417 MKIQCDVCENAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLETLSKKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSISASHQRFLATGIRVASSSNCTKNNEESHSEPSNRNSEQVSVKVPSQQVPTFTSAWAVDDLLDMADFESHDKKESLQFGELEWLEEVGLFGEQFPHEALAAAEVPQLPATHTSSNVVSYRTSKSYLSHKKPRIEVRYDDDDEFFTVPDLG* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2168 239 CDD Bbox1_BBX-like 57 98 - -
Lan6g2168 239 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Lan6g2168 239 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lan6g2168 239 MobiDBLite consensus disorder prediction 109 132 - -
Lan6g2168 239 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lan6g2168 239 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lan6g2168 239 Pfam B-box zinc finger 53 95 IPR000315 GO:0008270
Lan6g2168 239 Gene3D Classic Zinc Finger 1 93 - -
Lan6g2168 239 CDD Bbox1_BBX-like 5 47 - -
Lan6g2168 239 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lan6g2168 239 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lan6g2168 239 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2168 Lan-Chr6 32106694 32110653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2168 1 161 Orphan Transcription Factor Family AT1G06040 65.476 5.96e-67 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lan6g2168 zf-B_box 2.6e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2168 - - gmx:100814727 419.083
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2168 6 32106694 32110653 Lan10g0313 10 2074652 2077096 LSH
Lan6g2168 6 32106694 32110653 Lan7g0188 7 1150027 1151894 PCT
Lan6g2168 6 32106694 32110653 Lan8g1766 8 24330856 24333400 PCT
Lan7g0188 7 1150027 1151894 Lan6g2168 6 32106694 32110653 PCT
Lan8g1766 8 24330856 24333400 Lan6g2168 6 32106694 32110653 PCT