Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2160 ATGCAATACCCTTATTCCCCTAAAGGAAGAGGAATTGGGTACCAGTCTTGTCCTAGATCTCAATTGGAGGGATCAACTTCATTAGACAGTAGAATGAGCAATTCAATTTCAGAGAGTATACCTAACAGCTTCTCTGAGCTCTTGAACATTGATGCTTACTTTTGCAATAGCCCTTCCATGACTGATCAGATATTGAGTAACTGGCTTCCATCATTTGCCTCAGTACCATATCCGTCACCCGATAGATTCAACCTAATGGAACATAACTGTGGGCAATTCTATACGACAGAGGTTAATGGAAATTGCAGTGCTACAGAAACCTTGCCTAGTTATGGGGAAAGAGCTGTGTTTCAGCAAATGGACAACCTACCTAGTTTCTCAGATGATGCAACTAACTTCAATTCTAAGCAAAAAGTTAACGGCTCTGCTCAAAATCATAATAAATTTGATATGGGCAATTACTTGATCTCCAGGCCACCTGGTTTGTCACTTGATGAGAGAATGCTGAGGGCACTGTCCTTCTTTAAGGCATCAGCTGGTGAGGGAATTTTGGCACAAGTTTGGGTACCAATAAAACATGGTGACCAATTCGTTTTAACAACGAGTGAGCAACCTTATTTGCTAGACCAAATGCTTTCAGGGTACCGTGAAGTGTCAAGGACATTCACATTTTCTGTAGGAAAATTGGGTTCTATCCCGGGACTTCCTGGTCGTGTGTTTAACTCCCAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAATAAGGCTGAGTACTTGAGGGTGGAGCATGCAATTAATCATGAGGTTCGTGGATCAATTGCTTTTCCCATATCTGATGTGGACTCTGAACTACCATGCTGTGCTGTACTGGAACTGGTGACTACAACAGAAAAGCCTGATTTTAACAGTGAATTGGAACTTGTTTGTCATGCGCTCAAACTTGTAAATTTAAGGACTACTATGCCTCCACGACTTATTTCTCAGTGTCTTTCAAACAACAAAAGAGATGCTTTAACAGAGATAACTGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCACTGGCACTGACATGGATTCCCTGTTCTTATACTGAGTGCACAGAAGTTGAAGCTACCAGGATACAAATTAAAGAGGGTCATTCAAGTTCTAGTGAAAAAAGCATACTGTGCATCGAAGAGTCAGCTTGCTATATAGCTGATAGAGCAATGGAAGGGTTTGTTCAAACATGCATTCAACATCATCTTGAGGAAGGGAAAGGTATAGCTGGGAAAGCTCTGCAATCAAACCATCCTTTTTTCTGTCCTGATGTGAAGGCCTACGATATTAGTGAATACCCACTTGTCCATCATGCCCGCAAATATAACTTGAATGCTGCAGTTGCAATTAAGCTAAGGAGCACTTATACTAATGACGATGATTACATCTTGGAATTCTTTCTGCCTGTCACTGTGAGAGGGAGTTTAGAGCAACAACTTTTATTAGACAACCTCTCGGGTACCATGCAGAAAATGTGTAGGAGTTTGAGGACAGTTTCAGATGCTGAATTATCAGGAACAGAAAACTCACAAACGGGATATGAAAATAAAAATGTATTCAGTTTTTCCCCTATGTCTAGGAAAAAATCTCAAATACCACTAGTAAGCGGTAACCATAATTCAATCCAGAACATGTCACTGGAGGCATCAAACCTGAGAAACAGTGAAATTGAGCCTTCTCATAACCAGGAAGCAAATGAATCAAGAAGACAGGTTTTGAAAAAGCGAACAACATCAGAGAAGAATGTTAGCTTGAGCGTTCTACAACAATACTTTTCTGGGAGTCTGAAGGATGCGGCAAAAAGTATTGGTGTTTGCCCAACAACCCTGAAAAGGATATGCAGGAACAATGGGATTTCAAGGTGGCCATCCCGCAAGATTAATAAAGTGAATCGTTCATTAAAGAAAATACAGACTGTGCTTGATTCCGTCCAGGGAGTGGAAGGAGGGTTAAATTTTGATCCATCTAAGGGGGAATTTGTGGCACATAAAAGTCATTTGCTTCCTAAGAAAAGTACTACGAAAGACCCTGGGCCTGTTACAGAAGTTGCAGTCCTAGTACCACCAGCGCCTTGTAGTGAAAGTGATAAGTCGGCATTTAAGTTTGAGATCACCAACGTTCATGTTATGGGAAAGCAACTTGTGCACTCATCGTACGAATTGAAGAAAGCTAATGCTTCTTCGGTTGATTGTAGTGAAGATTCAAAATCAATGGAAACGGAGTATGATATTTCATTGAGGGCAGAAAAATCTGAACGCGATATAGTTGGAATGGACACTGGTATGGATGGCGACGATGGGGTTGTTGAACTTAACCACCCTTCTTGTTCAAGCTTGACAAACTCATCTAATAACTCTAGTTCAATGATTCATAGTAGTTCATCCGCCTCTCAGAGCTTTGAGAACAAGGAGCATTCCAAAATCAAATCAACCGTTGCTGATAGTGAGTCAAAGATTGTTGTTAAAGCTACCTATAGAGAAGACACGGTTCGCTTCAAGTTTGATCCGTCTTCGGGTTGTTCCCAGCTATATGAAGAAATTGGAACAAGATTCAAATTACAAGAAGGGTTATTCCAGCTCAAATATCTAGATGACGAAGATGAATGGGTGATGTTGGTGAATGACTCGGATTTGCAAGAGTGTATCGATATAATGGATGATACTGGCACGCGTAACGTCAAGTTTCTTGTTCGCGATATGCCCTGTGTTTTAAGTAGCTCCGGCAGTAGCAGTTGCTACTTGGGATGCAGCTCGTAG 2802 0.4111 MQYPYSPKGRGIGYQSCPRSQLEGSTSLDSRMSNSISESIPNSFSELLNIDAYFCNSPSMTDQILSNWLPSFASVPYPSPDRFNLMEHNCGQFYTTEVNGNCSATETLPSYGERAVFQQMDNLPSFSDDATNFNSKQKVNGSAQNHNKFDMGNYLISRPPGLSLDERMLRALSFFKASAGEGILAQVWVPIKHGDQFVLTTSEQPYLLDQMLSGYREVSRTFTFSVGKLGSIPGLPGRVFNSQVPEWTSNVGYYNKAEYLRVEHAINHEVRGSIAFPISDVDSELPCCAVLELVTTTEKPDFNSELELVCHALKLVNLRTTMPPRLISQCLSNNKRDALTEITDVLRSVCHAHRLPLALTWIPCSYTECTEVEATRIQIKEGHSSSSEKSILCIEESACYIADRAMEGFVQTCIQHHLEEGKGIAGKALQSNHPFFCPDVKAYDISEYPLVHHARKYNLNAAVAIKLRSTYTNDDDYILEFFLPVTVRGSLEQQLLLDNLSGTMQKMCRSLRTVSDAELSGTENSQTGYENKNVFSFSPMSRKKSQIPLVSGNHNSIQNMSLEASNLRNSEIEPSHNQEANESRRQVLKKRTTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRNNGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLNFDPSKGEFVAHKSHLLPKKSTTKDPGPVTEVAVLVPPAPCSESDKSAFKFEITNVHVMGKQLVHSSYELKKANASSVDCSEDSKSMETEYDISLRAEKSERDIVGMDTGMDGDDGVVELNHPSCSSLTNSSNNSSSMIHSSSSASQSFENKEHSKIKSTVADSESKIVVKATYREDTVRFKFDPSSGCSQLYEEIGTRFKLQEGLFQLKYLDDEDEWVMLVNDSDLQECIDIMDDTGTRNVKFLVRDMPCVLSSSGSSSCYLGCSS* 934
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2160 933 MobiDBLite consensus disorder prediction 18 33 - -
Lan6g2160 933 SMART PB1_new 833 915 IPR000270 GO:0005515
Lan6g2160 933 Pfam PB1 domain 835 913 IPR000270 GO:0005515
Lan6g2160 933 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 5 930 - -
Lan6g2160 933 MobiDBLite consensus disorder prediction 1 33 - -
Lan6g2160 933 MobiDBLite consensus disorder prediction 789 816 - -
Lan6g2160 933 Pfam RWP-RK domain 597 645 IPR003035 -
Lan6g2160 933 Gene3D - 829 915 - -
Lan6g2160 933 ProSiteProfiles RWP-RK domain profile. 578 665 IPR003035 -
Lan6g2160 933 MobiDBLite consensus disorder prediction 571 593 - -
Lan6g2160 933 MobiDBLite consensus disorder prediction 575 592 - -
Lan6g2160 933 CDD PB1_NLP 836 914 IPR034891 -
Lan6g2160 933 SUPERFAMILY CAD & PB1 domains 827 917 - -
Lan6g2160 933 PANTHER PROTEIN NLP8 5 930 IPR045012 GO:0003700
Lan6g2160 933 MobiDBLite consensus disorder prediction 789 817 - -
Lan6g2160 933 ProSiteProfiles PB1 domain profile. 833 915 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2160 Lan-Chr6 32034096 32040409 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2160 163 930 NLP Transcription Factor Family AT3G59580 52.114 0.0 735
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lan6g2160 PB1 3.6e-17 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2160 - - gmx:100804426 1201.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2160 6 32034096 32040409 Lan8g1772 8 24366271 24372189 PCT
Lan8g1772 8 24366271 24372189 Lan6g2160 6 32034096 32040409 PCT