Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2156 ATGGAAGCGCCGGGTCGATCAGTGGAAGAAATATTCGAAGATTTCAGAGGCCGTAGAGATGTTGCAGATTTCTACAGTCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCTAACGAGCAGTGGGAGGTAAATCTGCCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTGCTGGGCATTAACTTTGCTAGGGATGGCATGCAAGAAAAAGACTGGTTGTCTTTAGTTGCTGTTCATAGTGACAGTTGGTTGCTTGCCCTTGCCTTCTATTTTGGAGCCAGATTTGGGTTTGATAAAGGTGACAGGAGGCGGCTGTTCAATATGATGAATGACCTACCAACTATATTTGAAGTTGTTACTGGTACTGCAAAGAAACAAGTTAAAGAGAAGTCTTCGGTTTCAAACAACAGTGGCAGCAAGTCCAAGTCCAGCTCTAAAGCGCGAGCTCCTGAGGCTCAGGGTAGTCAGTCAAAGGCATTGCAACCAAAAGACGAGGATGAAGTGGAAGAGCTGGGCGAAGATGATCACGGCGAAACCTTGTGTGGGGCATGCGGTGATGCTACTGATGATTTCTGGATATGCTGTGACATGTGCCAGCGGTGGTTCCATGGAAAATGTGTGAAGATCACCCCTGCTAGAGCAGCGCATATCAAGGACTACAAATGCCCATCATGCAGCAGCAACAAGAGAGCTCGTTAA 714 0.4678 MEAPGRSVEEIFEDFRGRRDVADFYSQCDPEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDSWLLALAFYFGARFGFDKGDRRRLFNMMNDLPTIFEVVTGTAKKQVKEKSSVSNNSGSKSKSSSKARAPEAQGSQSKALQPKDEDEVEELGEDDHGETLCGACGDATDDFWICCDMCQRWFHGKCVKITPARAAHIKDYKCPSCSSNKRAR* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2156 237 CDD PHD_AL_plant 185 233 IPR044104 -
Lan6g2156 237 ProSiteProfiles Zinc finger PHD-type profile. 183 233 IPR019787 -
Lan6g2156 237 SMART PHD_3 185 231 IPR001965 -
Lan6g2156 237 SUPERFAMILY FYVE/PHD zinc finger 159 231 IPR011011 -
Lan6g2156 237 Pfam PHD-finger 186 232 IPR019787 -
Lan6g2156 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 232 IPR013083 -
Lan6g2156 237 ProSitePatterns Zinc finger PHD-type signature. 186 230 IPR019786 -
Lan6g2156 237 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 237 - -
Lan6g2156 237 PANTHER CPG BINDING PROTEIN 1 237 IPR045104 GO:0006355|GO:0042393
Lan6g2156 237 MobiDBLite consensus disorder prediction 132 164 - -
Lan6g2156 237 MobiDBLite consensus disorder prediction 132 180 - -
Lan6g2156 237 Pfam Alfin 8 126 IPR021998 GO:0006355|GO:0042393
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2156 Lan-Chr6 32000550 32003730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2156 6 237 Alfin-like Transcription Factor Family AT3G42790 69.262 3.40e-108 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Lan6g2156 Alfin 2.3e-57 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2156 - - gmx:100170700 340.117
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2156 6 32000550 32003730 Lan10g0301 10 1977703 1981440 LSH
Lan6g2156 6 32000550 32003730 Lan3g0241 3 1567680 1571105 LSH
Lan6g2156 6 32000550 32003730 Lan2g0455 2 5003557 5009025 PCT
Lan2g0455 2 5003557 5009025 Lan6g2156 6 32000550 32003730 PCT