Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2152 ATGGGAAATCAGAAGCAAAAATGGACCGCCGATGAAGAAGACGCGCTCCACCGTGGCGTTCAGAAGTACGGTGCCGGAAAATGGAAGAACATCCTCAAAGATCCCGATTTCGCTCCTTTCCTCACTTCTCGTTCCAACATCGACCTTAAGGATAAATGGCGTAATTTGAATGTTAGCAATGGTCAAGGTGGTTCTAAAGATAAATCTAGGACTCCTAAGCCCAAAACAATTCTTGCTTCAGCTTCAACTCCTGGTCCTAGTTCAGCTTTAGTTATTGCTTCTGTTCCAGTTTCTGTTGCTGCTCCACTAAGTGTTGTTCCTGCTCCTCAGAGTAATAATGTTGATGATCCTTCTTCAAATGCTGAAGATTCCAAGATTCCGCCTCGGTACAATGCACTGGTTTTTGAAGCTCTATCAGCAATCAAAGATGCTAATGGTTCTGACGCAAATGCTATTTCTAGTTTCATCAAGCAAAATCATAAGGTTCCTACAAATTTCAGAAGGGCATTAAGTACAAGGTTGAAGAGGCTGGTTAGTCAAGGGAAAATTGAAAAGGTAGAAAATGGTTACAGGATGAAGGAAGCCCCAAGTGGAATGAAATCACCCTCACCAAAACCAAAGGATGCTTGGCCTCGACAATCATCAGCCTCCAGTTTTGTCTCATGCAGTGAGACAGTAAGAGAAGCCACCGCCACTGCAGCCTACAGAATTGCCGAGGCTGAGAACAAAGCATTTTTGGCTGCCGAGGCATTTAAGGAGGTAGATAGACTGTCGCAGATGGCTGAAGAAAATGAGGTAGTTTTACGGCTGGTGACACAGATGTATGAACAAAGTTTGCGCGGCGAAGTTGTTCTTCTGGATTAA 864 0.441 MGNQKQKWTADEEDALHRGVQKYGAGKWKNILKDPDFAPFLTSRSNIDLKDKWRNLNVSNGQGGSKDKSRTPKPKTILASASTPGPSSALVIASVPVSVAAPLSVVPAPQSNNVDDPSSNAEDSKIPPRYNALVFEALSAIKDANGSDANAISSFIKQNHKVPTNFRRALSTRLKRLVSQGKIEKVENGYRMKEAPSGMKSPSPKPKDAWPRQSSASSFVSCSETVREATATAAYRIAEAENKAFLAAEAFKEVDRLSQMAEENEVVLRLVTQMYEQSLRGEVVLLD* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2152 287 SUPERFAMILY Homeodomain-like 2 58 IPR009057 -
Lan6g2152 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Lan6g2152 287 PANTHER TELOMERE REPEAT-BINDING FACTOR 4-RELATED 1 286 - -
Lan6g2152 287 CDD SANT_TRF 6 57 - -
Lan6g2152 287 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Lan6g2152 287 Gene3D - 124 210 IPR036388 -
Lan6g2152 287 MobiDBLite consensus disorder prediction 193 213 - -
Lan6g2152 287 MobiDBLite consensus disorder prediction 55 84 - -
Lan6g2152 287 Gene3D - 8 83 - -
Lan6g2152 287 SMART sant 4 59 IPR001005 -
Lan6g2152 287 SUPERFAMILY "Winged helix" DNA-binding domain 127 201 IPR036390 -
Lan6g2152 287 PANTHER SINGLE MYB HISTONE 4 1 286 IPR044597 GO:0003691
Lan6g2152 287 Pfam linker histone H1 and H5 family 128 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan6g2152 287 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 126 194 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan6g2152 287 SMART h15plus2 123 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Lan6g2152 287 ProSiteProfiles Myb-like domain profile. 1 57 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2152 Lan-Chr6 31959174 31965478 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2152 1 286 Single Myb Histone (SMH) Gene Family AT1G72740 43.793 5.37e-73 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lan6g2152 Linker_histone 1.9e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2152 K09422 - gmx:780537 325.865