Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2149 ATGGAACCTCGTGTTGGGAACAAGTTCCGTCTTGGCCGAAAACTTGGTAGCGGATCATTCGGAGAAATCTATCTCGGTACTAATATTCAGACTAATGAAGATGTTGCGGTTAAGCTTGAAAAGGCTAAAACCAAGCATCCCCAATTGTTGTATGAATCGAAGCTGTATAAGATACTGCAAGGAGGAACTGGGATCCCAAATGTGAGATGGTTTGGTGTTGAAGGAGAATATAATGTCCTTGTAATGGATTTACTCGGCTCTAGTCTTGAGGATTTGTTTAATTTCTGTAGTCGGAAATTATCCCTCAAAACCGTTCTTATGCTTGCAGATCAGATGATTAACCGAGTTGAGTATGTTCATTCCAAATCATATTTACACAGGGACATCAAGCCAGACAACTTCCTCATGGGTTTGGGAAGGCGTGCAAATCAGGTGTATGCCATTGACTTTGGTCTTGCTAAGAAATACAGAGATAACTCTACCCATCTGCATATTCCATACAGAGAGAATAGGAATTTGACAGGAACAGCTAGATATGCTAGCATGAATACTCATCTTGGAATTGAGCAAAGCCGGAGGGACGACTTAGAGTCACTTGGATTCGTTCTTATGTATTTCTTGAGAGGAAGTCTTCCATGGCAGGGTTTGAAAGCGGGAAATAAGAAACAGAAGTATGAGAAAATCAGTGAGAAAAAAGTTTCTACTTCTATTGAGTCTCTCTGCCATGGCTATCCCTCAGAATTTGCTTCATACTTTCATTACTGTCGGTCACTGCGGTTTGATGACAAACCAGATTATGCTTATTTGAAAAGGCTCTTCCGTGACCTTTTCATTCGTGAAGGACTCCAATTTGATTATGTCTTTGATTGGACCATTTTGAAATATCAGCAATCTCAAATTTCTGCTCCTCCAGTACGAGCTATTCAGGGTGCTATTGCTGGACCAAGTTCTGGCATGCCACCACTTGTCAATGCTGATGGACAGACAGGTGGGCAAGATGGTAGGCATACTGGTTGGTCTTCATCAGTTCCTACTCGTCGAAGAAACACTGGACCTATTGCAAATGATGGAATCTTATCTAGACAAAAAGACCCTGTTACAAGTGACACAGCTGGATCCAAAGAAGTCAAGATGTCTGGTTCTAATATCTTCTTGTCAAGTGGATCTGCAAGGCGTGGTGCTGTCTCCAGCAGTCATGATGCCCATGTTGGCAGTGAGACCGAACCCTCTCGTCCTCATGCCATGGATGCAGGTCCAGCAGCACTCCGTAAAATCTCTGGTGCTCAAAGAAGTTCGACTATCACGACATCCGAGCACAACTGGTCATCCTCCGGCAGAAAAACATCAAACCTTAAGGATTATGAAAGGGCACTCAGAGGTATTGAGAGCCTGAATATCAAAGATCAGAGGGTACAGTATTAG 1422 0.4297 MEPRVGNKFRLGRKLGSGSFGEIYLGTNIQTNEDVAVKLEKAKTKHPQLLYESKLYKILQGGTGIPNVRWFGVEGEYNVLVMDLLGSSLEDLFNFCSRKLSLKTVLMLADQMINRVEYVHSKSYLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDNSTHLHIPYRENRNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKAGNKKQKYEKISEKKVSTSIESLCHGYPSEFASYFHYCRSLRFDDKPDYAYLKRLFRDLFIREGLQFDYVFDWTILKYQQSQISAPPVRAIQGAIAGPSSGMPPLVNADGQTGGQDGRHTGWSSSVPTRRRNTGPIANDGILSRQKDPVTSDTAGSKEVKMSGSNIFLSSGSARRGAVSSSHDAHVGSETEPSRPHAMDAGPAALRKISGAQRSSTITTSEHNWSSSGRKTSNLKDYERALRGIESLNIKDQRVQY* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2149 473 CDD STKc_CK1_delta_epsilon 8 281 - -
Lan6g2149 473 MobiDBLite consensus disorder prediction 330 349 - -
Lan6g2149 473 PANTHER CASEIN KINASE-RELATED 1 457 - -
Lan6g2149 473 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lan6g2149 473 PANTHER CASEIN KINASE 1-LIKE PROTEIN 2 1 457 IPR030509 GO:0004672|GO:0005524
Lan6g2149 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Lan6g2149 473 MobiDBLite consensus disorder prediction 426 448 - -
Lan6g2149 473 MobiDBLite consensus disorder prediction 328 375 - -
Lan6g2149 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2149 473 MobiDBLite consensus disorder prediction 387 450 - -
Lan6g2149 473 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2149 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Lan6g2149 473 Gene3D Transferase(Phosphotransferase) domain 1 1 309 - -
Lan6g2149 473 Pfam Protein kinase domain 10 226 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g2149 473 MobiDBLite consensus disorder prediction 361 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2149 Lan-Chr6 31946262 31951698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2149 7 219 EF-hand Containing Proteins AT2G17890 28.959 8.08e-15 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lan6g2149 Pkinase 5.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2149 K02218 - gmx:100778165 783.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2149 6 31946262 31951698 Lan2g0394 2 3987097 3992847 PCT