Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2123 ATGGATGGTCTGAGTTGGGATGCTTCACAACTTGTTTCTGACGTACCAATCTTGTGGAGCACTCATCAGCAAGAGCTTGAAGGAGGAGGCTACTCCATACCCAACCTAAGTTCAAGTGTTCTTAATCAAATGCAAGAGATGCAGAAGTCTCAAACAATAGATGGTACCTCTTCTTCTGAGATGATAATGAGTATGATGATGCCACACACAAATCTGTCATCACAGAGAACAGCAACCATGCCTGTTAAATCAGTAGCTGGAAACAGTTGGGAATTAGAAGCTTACACATCTCAATCATGCCACCAGTCTCTTTCAGAGAGTATGATGAACAATTATGTGCCAGATTTCAGCATGGCCCACCAACAACAACAGCTTCTTATCAATAATGGCACACTACAAAACTCCAAAGTTATCAACAATACTCTTGATCATTGCTTGCTTTCCAATATTGAAAGTTTCATCAGCACAGAAAACAAGTCTTTCCAAGACATTATTGATGATGGGATTTCAATGATTTTATCTGACTGCAGAAACTTATGGAACAACAACTTTGGTAATGGAAACAGTGTTGCTGCAGTTTCCTCTGGTGAATCTGAGAGTGATGCTTCCAATTCTAGAGACAAAAACATGCAACAGTACCATCATGTCAATGAATTGGAAGAAACAGTAGTATCTCAAAGCTCCTCAGATCAATATGTTAGTCAACCAAAATTCATAGATTCTTATAAGGTTAATAATTGCACAAAAAGGAGTAATGATATTCAGTATGATCCCTACTTCAGTATTGTTCAGAATTCTCCTGCTAATAACACTGAAGTTGGTACTATCAAGATTATCTCAGAGAATCAACCAAAATCCAAGAAACCAAGGTGGGGTCATCATAAGCATCCTTGTTCATCTACTATAAGTTTTCAGCAGCCAAACTCATCATCAGTGTCATCACTCAGTGAAGATTCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGACTGCAGCGTTTAGGCCAGTGAACTTAGGCTTGGAGGTTGTGGAAAAGCCTAAGAGGAAGAATGTGAGGATATCATCTGATCCACAAACTGTGGCTGCAAGGCAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCAGGTGGAAGCAATATGGATACTGCATCAATGCTTGATGAGGCTGCTAACTACCTCAAGTTTCTTAGGTCACAAGTGAAAGCACTAGAAAGTCTAGGGAACAAGGTTGATGCAATGAATAATTGTCATGCTACTAGTATTTCATTCTCTTTCAACCCTTCTTTTCCCATGCAGACTCATTTCCCCATCCAAAACCCTAGCCACAGTATCCAACCTTTCCTGGGATGA 1374 0.3988 MDGLSWDASQLVSDVPILWSTHQQELEGGGYSIPNLSSSVLNQMQEMQKSQTIDGTSSSEMIMSMMMPHTNLSSQRTATMPVKSVAGNSWELEAYTSQSCHQSLSESMMNNYVPDFSMAHQQQQLLINNGTLQNSKVINNTLDHCLLSNIESFISTENKSFQDIIDDGISMILSDCRNLWNNNFGNGNSVAAVSSGESESDASNSRDKNMQQYHHVNELEETVVSQSSSDQYVSQPKFIDSYKVNNCTKRSNDIQYDPYFSIVQNSPANNTEVGTIKIISENQPKSKKPRWGHHKHPCSSTISFQQPNSSSVSSLSEDSEAIAQMKEMIYRTAAFRPVNLGLEVVEKPKRKNVRISSDPQTVAARQRRERISERIRVLQKIVPGGSNMDTASMLDEAANYLKFLRSQVKALESLGNKVDAMNNCHATSISFSFNPSFPMQTHFPIQNPSHSIQPFLG* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2123 457 Gene3D - 360 425 IPR036638 GO:0046983
Lan6g2123 457 MobiDBLite consensus disorder prediction 283 316 - -
Lan6g2123 457 Pfam Helix-loop-helix DNA-binding domain 365 404 IPR011598 GO:0046983
Lan6g2123 457 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 355 404 IPR011598 GO:0046983
Lan6g2123 457 PANTHER TRANSCRIPTION FACTOR BHLH87 1 452 - -
Lan6g2123 457 MobiDBLite consensus disorder prediction 298 316 - -
Lan6g2123 457 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 361 416 IPR036638 GO:0046983
Lan6g2123 457 SMART finulus 361 410 IPR011598 GO:0046983
Lan6g2123 457 Coils Coil 394 414 - -
Lan6g2123 457 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 452 IPR045843 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2123 Lan-Chr6 31741451 31744125 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2123 101 454 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 44.568 5.25e-76 240
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2123 - - lang:109358246 526.168
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2123 6 31741451 31744125 Lan10g0275 10 1770452 1772805 LSH
Lan6g2123 6 31741451 31744125 Lan3g0214 3 1371066 1372792 LSH