Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2120 ATGATGAATGGTGGGTCAAGAAATGAGGTTTCTCCTAAGCTTTTGGATTTGATCTCAAATGAGAAAGAGTGGAACATGAACAAGAGTGAAGGAAAGTGTTCAGATGAAAGAAAACTTGAGCTGAAGCTTGGTCCACCTAGTGGTGAAGATTGGTGTGAAGATAAAATGAAAAACATCAACAACACTAGTACTGAAAGAGATGAATCTTTATTCTCTCTTAGTTACTTCTCAAACAATGGTTTTCAAAAACAGAATCTTTCAACTTCTGACACTCCATCTAAGTCTATTTTACCCTCTTCATGGTCTTCTTCAACAAGTTACCATCACCAACATAAGGGTAATAATAAAGCTTCATCATTTCTTGTGATGGGAAATGATGCATCTAAAGCTAAGGTTGTAGAGTTGCAGAATGGTGCTGTTGATAAGAAAATGTTTTCTTCTCCCTCTTCTGCAAATACAGCTGTTCTCAACAACACCTCTCAGAAAAGAAATGCTCCTACTCCAATGGTAGGTTGGCCTCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCACTTCTAAGCCACCACTTGAGTCCTCTCAGCAACAGGAACAGCATGACAAGGTTGTTGGTAAGAAACATGTTGACAACTATGGTAATGGTGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGTGTTCCCATTGGTAGAAAAGTGGACCTAAATGCTTACTATAGTTATGAAAATCTATCCTCTTCTGTGGATGAGCTTTTTAGAGACCTCCTTGCAGCTCAAAGAGATTCCTCTGCTGGTGGAGTTAACAAGAAGAAAGAGGAAGAGAAACCCATTATGGGTTTATTAGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGAATGCTTGTTGGGGATGTGCCATGGCAAATGTTCATATCAACAGTTAAGAGGCTGAGGGTGTTGAAAAGTACTGAGCTTTCAGCTTTTACCTTTGGTAGTAAGCAAGAAAAGATATCAACTGAATCAACAATGAAATGA 1038 0.3892 MMNGGSRNEVSPKLLDLISNEKEWNMNKSEGKCSDERKLELKLGPPSGEDWCEDKMKNINNTSTERDESLFSLSYFSNNGFQKQNLSTSDTPSKSILPSSWSSSTSYHHQHKGNNKASSFLVMGNDASKAKVVELQNGAVDKKMFSSPSSANTAVLNNTSQKRNAPTPMVGWPPIRSFRKNLASSSTSKPPLESSQQQEQHDKVVGKKHVDNYGNGGKGLFVKINMDGVPIGRKVDLNAYYSYENLSSSVDELFRDLLAAQRDSSAGGVNKKKEEEKPIMGLLDGSGEYTLVYEDNEGDRMLVGDVPWQMFISTVKRLRVLKSTELSAFTFGSKQEKISTESTMK* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2120 345 MobiDBLite consensus disorder prediction 179 199 - -
Lan6g2120 345 Pfam AUX/IAA family 39 327 IPR033389 -
Lan6g2120 345 MobiDBLite consensus disorder prediction 144 166 - -
Lan6g2120 345 Gene3D - 214 334 - -
Lan6g2120 345 SUPERFAMILY CAD & PB1 domains 217 320 - -
Lan6g2120 345 MobiDBLite consensus disorder prediction 84 113 - -
Lan6g2120 345 ProSiteProfiles PB1 domain profile. 219 323 IPR000270 GO:0005515
Lan6g2120 345 MobiDBLite consensus disorder prediction 144 205 - -
Lan6g2120 345 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 4 337 - -
Lan6g2120 345 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 4 337 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2120 Lan-Chr6 31716232 31719955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2120 223 334 B3 DNA Binding Superfamily AT4G23980 33.929 1.11e-13 70.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Lan6g2120 AUX_IAA 3.1e-68 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2120 K14484 - gmx:100804593 410.994
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2120 6 31716232 31719955 Lan10g0272 10 1744920 1748730 LSH
Lan6g2120 6 31716232 31719955 Lan3g0208 3 1340501 1344184 LSH