Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2103 ATGTCTAAACCATTGGAAAATCCATCAATGGATAGAAACTCTAACAAGATATCTTCTTCTCTTAACTTCAAGGAGACAGAACTTAGGCTTGGTCTCCCAGGTTGTCATTCTCATGAGAAAAATTCAGGTTTTGTTGTTGGGGTGTCTCTTTTTGGCATGAACTTGAATAATAACAATATTTCTTCTGTTGCAACTCCTTTGAAGAATCTTGTGGCTGGGGCTAAGAGGGGTTTCTCTGATGCTATTGATGGATCTGAGACAAAAGCTAACACTCATCAGGTTAATAATAATTCTTCTGCACAAACCATCAAAGAGGTTGGTAATGGTATAGTTCCACATTCTGCTAAGCTTGTTCAGGAAAAGAATGTTACTGTTCCTGCAGCAAAGGCACAGGTTGTAGGGTGGCCACCAATTCGATCTTTTCGAAAGAACACCATGGCTTCTAATTCGACGAAGAACGACAATGAAGGTGAAGGAAAACCAGGATTTGGTTGTCTCTTTGTAAAGGTCAGCATGGATGGAGCCCCTTATCTCAGAAAAGTTGATTTGAAAACCTACAGCAACTATAAGGAACTTTCTCAAGCACTTGAAAAAATGTTCAGTTGCTTTACCATTGGACAATGCAATTCTCATGGAGTTTCTGTTAAAGATGGATTAAGTGAGAGTTCTTTAAGGGATCTTCTCCATGGTTCTGAATATGTTCTTACATATGAAGATAAAGATGGAGATTGGATGCTTGTAGGTGATGTTCCTTGGGAGATGTTCATTGACTCATGTAGGAGACTAAGGATCATGAAAGGCTCTGAGGCAATTGGGCTAGCTCCAAGGGCCATGGAAAAATCTAGGAGCCAAAACTAG 858 0.3986 MSKPLENPSMDRNSNKISSSLNFKETELRLGLPGCHSHEKNSGFVVGVSLFGMNLNNNNISSVATPLKNLVAGAKRGFSDAIDGSETKANTHQVNNNSSAQTIKEVGNGIVPHSAKLVQEKNVTVPAAKAQVVGWPPIRSFRKNTMASNSTKNDNEGEGKPGFGCLFVKVSMDGAPYLRKVDLKTYSNYKELSQALEKMFSCFTIGQCNSHGVSVKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDSCRRLRIMKGSEAIGLAPRAMEKSRSQN* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2103 285 SUPERFAMILY CAD & PB1 domains 165 266 - -
Lan6g2103 285 ProSiteProfiles PB1 domain profile. 165 267 IPR000270 GO:0005515
Lan6g2103 285 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g2103 285 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 11 277 IPR003311 GO:0005634|GO:0006355
Lan6g2103 285 Gene3D - 162 279 - -
Lan6g2103 285 PANTHER AUXIN-RESPONSIVE PROTEIN 11 277 - -
Lan6g2103 285 Pfam AUX/IAA family 25 276 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2103 Lan-Chr6 31590991 31594059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2103 147 265 B3 DNA Binding Superfamily AT5G37020 31.933 1.81e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan6g2103 AUX_IAA 1.2e-92 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2103 K14484 - gmx:100804423 391.734