Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2090 ATGGATGGCATTGAAGATGATGATACAAGGTATCCCTCTAACCCTTATAGGGTTAGTCACCACCAGCAAGGTTTTGGTTATATGAGTCATCGGAAACTTCCTACGAATGTTTATCCATATTCGCAGCCGGTTGAAAATGAATATGGGGAAAATAATAATATTAGTGAGAGTGAGGAAGAGGAAGAGCAATTAGGAGAGGAGGGAGATGACGATGATGATGTTAACAATATTCACCCTTCGGAAAAGGATGCGGATGACAATGAAGATCAGGAGGAAGATGATGCTGATGCAAATGGTGGTGGTGATGAAAATTGTGATGATAATGGTGATGGCGAGGATGATGATGATGATGACGATGATAAGGGGAAAAGTTATATCATGGAGATTGATGATGATTTAGAGCGCCAACCAAAAAAGCAAAAGCTGAAGAGTTTGATTTCAGCTTATGAATTTGCACCCCGTGTGCCAGCACCATCTGCTGCAGCTCCTAAACCATCTTCTGGTGGTAGGAATCCCCTTACTGATTGGACTGAGCACGAGACATTTGTCCTTCTTGATGTATGGGGTGATCGGTTTCTTCAACATGGAAGGAAGAGTCTTCGATCCGAGGAATGGCAAGAAGTTGCAGAAAAGGTGTCAAAAGTTTCAAGAGTTGAAAGGACAGATACTCAGTGTAGAAACCGTCTAGATACATTGAAGAAGAAATACAAAAAGGAGAAGATTAAATTTCCAGAAATGGACGGTGGAACCAGCAACTGGGTTTATTTCAAAAGGATGGACAAACTAATGTCGTCTCCACCACAACAAGCAGGTATTTCTTGCGGTTTGGATTCCGGGGAGTATGTTTCTACGAACTCTAGAATTTATTCAAATCGTGCAAACGGATTGGATGAAACGAGGGATAGTCCTGAGAATACAGAATCTACCAAAGAAGGTTCAGATGGGCCTCATGCAAAGAAAAGAAGAAAGGGAAGGAGTAGCAGTGAATCTTCTTCCTTCAGATTACTTGCCGATTCCCTTCATAAATTCAGTAACATATACGAGAAGATTGAAAATGATAGAAGGCAACAGATGGTGGAACTAGAAAAGATGAGGATGGATTTTCAAATGGAAATAGAAACACAAAGGCGGCAGGTTTTAGAAAGATTGCAGAGCGAGATTTCGAAACTAGACCAGACAGAAGATGATGAGAATGATGGTTCTTCTGAGAATGGTATGTGA 1221 0.4111 MDGIEDDDTRYPSNPYRVSHHQQGFGYMSHRKLPTNVYPYSQPVENEYGENNNISESEEEEEQLGEEGDDDDDVNNIHPSEKDADDNEDQEEDDADANGGGDENCDDNGDGEDDDDDDDDKGKSYIMEIDDDLERQPKKQKLKSLISAYEFAPRVPAPSAAAPKPSSGGRNPLTDWTEHETFVLLDVWGDRFLQHGRKSLRSEEWQEVAEKVSKVSRVERTDTQCRNRLDTLKKKYKKEKIKFPEMDGGTSNWVYFKRMDKLMSSPPQQAGISCGLDSGEYVSTNSRIYSNRANGLDETRDSPENTESTKEGSDGPHAKKRRKGRSSSESSSFRLLADSLHKFSNIYEKIENDRRQQMVELEKMRMDFQMEIETQRRQVLERLQSEISKLDQTEDDENDGSSENGM* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2090 406 PANTHER OS01G0718900 PROTEIN 56 405 - -
Lan6g2090 406 MobiDBLite consensus disorder prediction 85 121 - -
Lan6g2090 406 Pfam Myb/SANT-like DNA-binding domain 175 262 IPR044822 -
Lan6g2090 406 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 56 405 IPR044823 -
Lan6g2090 406 MobiDBLite consensus disorder prediction 297 318 - -
Lan6g2090 406 MobiDBLite consensus disorder prediction 287 333 - -
Lan6g2090 406 MobiDBLite consensus disorder prediction 35 51 - -
Lan6g2090 406 MobiDBLite consensus disorder prediction 383 406 - -
Lan6g2090 406 ProSiteProfiles Myb-like domain profile. 176 233 IPR001005 -
Lan6g2090 406 MobiDBLite consensus disorder prediction 52 74 - -
Lan6g2090 406 MobiDBLite consensus disorder prediction 122 141 - -
Lan6g2090 406 MobiDBLite consensus disorder prediction 1 172 - -
Lan6g2090 406 Coils Coil 347 396 - -
Lan6g2090 406 Gene3D - 176 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2090 Lan-Chr6 31506617 31508558 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2090 333 392 Trihelix Transcription Factor Family AT3G14180 45.000 6.31e-09 55.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lan6g2090 Myb_DNA-bind_4 3.3e-21 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2090 6 31506617 31508558 Lan10g0238 10 1517071 1519024 LSH
Lan6g2090 6 31506617 31508558 Lan3g0177 3 1148908 1150882 LSH