Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2082 ATGGAGACCGAGCTAACCCTAGGTCTTCCTGGTGTAAAAACTGGAACCAAACGTGGTTTCTTTGACACCATTGATCTTCATCTTGCTACCCCAAACCATGCTTCTGCAAATTCAGGAAATAACTTCTTGTGCTCAGCTACAAAATCTCAAGCACCCAAGGAACAAATGGTGGGGTGGCCGCCGGTGAGGGCGAGTAGGAAGAATGGAATGAAGAAATGCAAGTATGTGAAGGTGGCAATGGATGGAGCTCCATATCTGAGAAAAGTGGATCTAGAAATGTATGAGGGTTATGACCAGCTTCTCAGGGCATTAGAGACCATGTTTTCTTGCTTAACCATCCGCAATCAATTGAATGAGAGAAAACTCATGGATAAAGGAAATGGGGTTGAATACATGCCCACTTATGAGGACAGAGATGGTGACAAGATGTTGCTTGGGGATGCACCTTGGGAGATGTTTGTTGAATCATGCAAGAGAATAAGGCTGATGATAAGCTCAGAAACCATTGGCTTAGATCCAATGAATGCTTCAAAATGTAAGGGAAATCAATTAAGAAGAATAAATGGTGCAATAATAAGTTGTTAA 585 0.4222 METELTLGLPGVKTGTKRGFFDTIDLHLATPNHASANSGNNFLCSATKSQAPKEQMVGWPPVRASRKNGMKKCKYVKVAMDGAPYLRKVDLEMYEGYDQLLRALETMFSCLTIRNQLNERKLMDKGNGVEYMPTYEDRDGDKMLLGDAPWEMFVESCKRIRLMISSETIGLDPMNASKCKGNQLRRINGAIISC* 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2082 194 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 2 168 IPR003311 GO:0005634|GO:0006355
Lan6g2082 194 ProSiteProfiles PB1 domain profile. 73 167 IPR000270 GO:0005515
Lan6g2082 194 SUPERFAMILY CAD & PB1 domains 65 164 - -
Lan6g2082 194 Gene3D - 67 177 - -
Lan6g2082 194 PANTHER AUXIN-RESPONSIVE PROTEIN 2 168 - -
Lan6g2082 194 Pfam AUX/IAA family 13 173 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2082 Lan-Chr6 31438241 31440010 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2082 6 185 B3 DNA Binding Superfamily AT4G23980 29.444 4.58e-12 62.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan6g2082 AUX_IAA 5.2e-51 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2082 K14484 - qsu:112027116 241.891