Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2081 ATGGCCAAGGAATTAGGACTTGGACTTGAAATCACGGAGCTAAGGTTAGGTCTTCCCGGTGGGGAACCTATGTGTGTTGATAAGAATTATAAGAAGAGGGTGTTCTCGGAGATTGAGGGTGGCGGCGACGAAAACAGCTCCTCCGATGACCGGAAAATGCCGACGAAGAATCAAATGGTGGGGTGGCCTCCGGTGTGCTCATACCGGAAGAAGAATAGTGTGAATGAAGCTTCAAGACCTTATGTTAAGGTTAGCATGGATGGTGCTCCATTCTTGCGTAAAATTGATTTAGGTATGCATAAGGGGTACTCAGAATTAGCTTTGGCCTTGGAGAAGCTCTTTGGTTGCAATGGAATAGGTGAGGCATTGAAAAATGCAGACAATTGTGAACAAGTTCCCATTTATGAAGACAAAGATGGTGATTGGATGCTGATTGGAGATGTTCCTTGGGAGATGTTTATTGAATCATGCAAGAGGCTGAGAATTATGAAGAGATCAGATGCAAAAGGCTTTGATATGCAACCAAAAGGGTCTTTAAAGGGATTTATAGAAGGCGTGACAAAGTAA 567 0.4356 MAKELGLGLEITELRLGLPGGEPMCVDKNYKKRVFSEIEGGGDENSSSDDRKMPTKNQMVGWPPVCSYRKKNSVNEASRPYVKVSMDGAPFLRKIDLGMHKGYSELALALEKLFGCNGIGEALKNADNCEQVPIYEDKDGDWMLIGDVPWEMFIESCKRLRIMKRSDAKGFDMQPKGSLKGFIEGVTK* 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2081 188 ProSiteProfiles PB1 domain profile. 79 167 IPR000270 GO:0005515
Lan6g2081 188 MobiDBLite consensus disorder prediction 37 51 - -
Lan6g2081 188 MobiDBLite consensus disorder prediction 37 56 - -
Lan6g2081 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA6 6 171 - -
Lan6g2081 188 Gene3D - 73 176 - -
Lan6g2081 188 SUPERFAMILY CAD & PB1 domains 73 164 - -
Lan6g2081 188 Pfam AUX/IAA family 46 171 IPR033389 -
Lan6g2081 188 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 171 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2081 Lan-Chr6 31426600 31430566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2081 75 186 B3 DNA Binding Superfamily AT4G23980 35.714 1.34e-12 63.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Lan6g2081 AUX_IAA 7.4e-44 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2081 K14484 - gmx:100811879 299.671
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2081 6 31426600 31430566 Lan3g0168 3 1088019 1089835 LSH