LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g2080	ATGAGTGGAGCTTTAGCAGGGTTACAAGATCACCTCAAATTAGCAAGAGAATACGCACTCGAAGGAATCTACGACACTTCAATCATCTTCTTCGATGGCGCCATTGCACAAATCAACAAGCATTTGAATAGTGTTGATGATCCGTTAATCCGTTCAAAATGGATGAACGTGAAGAAAGCACTATCTGAAGAAACTGAAGTAGTGAAGCAACTAGATGCGGAGAGAAATGCATTTAAGGAAAGTTCAATTGCAAATTCAAGAAGGCCTCCTTCACCACCGATATCAGTTTCTTCTGCTAAATCTAATTTTGTATTTCAGCCGTTGGATGAGTATCCGACTTCGTCATCATCGGGCGGAGGTGGAGGTGGAGGTGGTTTTAGTAATACGGTGGATGATCCAGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCTGCGAGGAATTTGAAGAAGGATGGCGCGTGGGCGCGTGGTGCTACTTCCAGAACATCAACAACGGGTGCTGCGACAAATGCTAATGCTCGTGGTGGTGCGAGGCTTAGTAGGGTTAACTCTGGAACTCGAGGATCGGCCGCTGCGAAGAAAGGGAATGCTTCTGGAAAGTCCAGTAAGACAGATTCAAATGGGGATGGTGATGATGGAAAGTCAAAGAGGCCACAATATGAAGGTCCCGATCCCGACTTGGCTGAAATGCTTGAAAGAGATGTCTTAGAAACCTCTCCTGGAGTCAGATGGGATGATGTTGCCGGCCTCTCCGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAAAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCCGGGGAGCATGAATCGTCCAGAAGGGTAAAGTCTGAACTTTTAGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCGTGGGACATAGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGTGGCCACCGATGTCAATATGGATGATGTGGCTCGCCGAACAGAAGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAGATCAAGAACATGCCCAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGATCGACATGAGAAGTGGTTTCATGAATTTGGATCAGCATAA	1605	0.448	MSGALAGLQDHLKLAREYALEGIYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAERNAFKESSIANSRRPPSPPISVSSAKSNFVFQPLDEYPTSSSSGGGGGGGGFSNTVDDPDVWRPPSRDTSRRPQAARNLKKDGAWARGATSRTSTTGAATNANARGGARLSRVNSGTRGSAAAKKGNASGKSSKTDSNGDGDDGKSKRPQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNMDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA*	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g2080	534	Hamap	Meiotic spindle formation protein mei-1 [mei-1].	6	534	IPR028596	GO:0008017\|GO:0008568\|GO:0051013
	Lan6g2080	534	Pfam	ATPase family associated with various cellular activities (AAA)	286	423	IPR003959	GO:0005524\|GO:0016887
	Lan6g2080	534	PANTHER	AAA DOMAIN-CONTAINING	4	534	-	-
	Lan6g2080	534	MobiDBLite	consensus disorder prediction	162	209	-	-
	Lan6g2080	534	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	246	531	IPR027417	-
	Lan6g2080	534	Gene3D	-	244	524	IPR027417	-
	Lan6g2080	534	MobiDBLite	consensus disorder prediction	210	231	-	-
	Lan6g2080	534	SMART	AAA_5	282	425	IPR003593	-
	Lan6g2080	534	Gene3D	-	1	79	-	-
	Lan6g2080	534	MobiDBLite	consensus disorder prediction	108	231	-	-
	Lan6g2080	534	PANTHER	KATANIN P60 ATPASE-CONTAINING SUBUNIT A1	4	534	-	-
	Lan6g2080	534	CDD	AAA	280	423	-	-
	Lan6g2080	534	MobiDBLite	consensus disorder prediction	108	123	-	-
	Lan6g2080	534	Gene3D	-	424	510	-	-
	Lan6g2080	534	ProSitePatterns	AAA-protein family signature.	395	414	IPR003960	GO:0005524\|GO:0016887
	Lan6g2080	534	Pfam	AAA+ lid domain	445	486	IPR041569	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g2080	Lan-Chr6	31419598	31423479	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g2080	238	526	Calmodulin-binding Proteins	AT3G56690	40.000	6.60e-51	186

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g2080	K07767		-	rcu:8271350	830.091

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lan6g2080	6	31419598	31423479	Lan10g0174	10	1119581	1122120	LSH
	Lan6g2080	6	31419598	31423479	Lan3g0164	3	1056462	1060149	LSH
	Lan6g2080	6	31419598	31423479	Lan10g0225	10	1424706	1428587	LSH
	Lan6g2080	6	31419598	31423479	Lan8g1607	8	23038369	23043003	PCT
	Lan6g2080	6	31419598	31423479	Lan13g0427	13	3069563	3074973	PCT
	Lan8g1607	8	23038369	23043003	Lan6g2080	6	31419598	31423479	PCT
	Lan13g0427	13	3069563	3074973	Lan6g2080	6	31419598	31423479	PCT