Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lan6g2080 | ATGAGTGGAGCTTTAGCAGGGTTACAAGATCACCTCAAATTAGCAAGAGAATACGCACTCGAAGGAATCTACGACACTTCAATCATCTTCTTCGATGGCGCCATTGCACAAATCAACAAGCATTTGAATAGTGTTGATGATCCGTTAATCCGTTCAAAATGGATGAACGTGAAGAAAGCACTATCTGAAGAAACTGAAGTAGTGAAGCAACTAGATGCGGAGAGAAATGCATTTAAGGAAAGTTCAATTGCAAATTCAAGAAGGCCTCCTTCACCACCGATATCAGTTTCTTCTGCTAAATCTAATTTTGTATTTCAGCCGTTGGATGAGTATCCGACTTCGTCATCATCGGGCGGAGGTGGAGGTGGAGGTGGTTTTAGTAATACGGTGGATGATCCAGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCTGCGAGGAATTTGAAGAAGGATGGCGCGTGGGCGCGTGGTGCTACTTCCAGAACATCAACAACGGGTGCTGCGACAAATGCTAATGCTCGTGGTGGTGCGAGGCTTAGTAGGGTTAACTCTGGAACTCGAGGATCGGCCGCTGCGAAGAAAGGGAATGCTTCTGGAAAGTCCAGTAAGACAGATTCAAATGGGGATGGTGATGATGGAAAGTCAAAGAGGCCACAATATGAAGGTCCCGATCCCGACTTGGCTGAAATGCTTGAAAGAGATGTCTTAGAAACCTCTCCTGGAGTCAGATGGGATGATGTTGCCGGCCTCTCCGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAAAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCCGGGGAGCATGAATCGTCCAGAAGGGTAAAGTCTGAACTTTTAGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCGTGGGACATAGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGTGGCCACCGATGTCAATATGGATGATGTGGCTCGCCGAACAGAAGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAGATCAAGAACATGCCCAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGATCGACATGAGAAGTGGTTTCATGAATTTGGATCAGCATAA | 1605 | 0.448 | MSGALAGLQDHLKLAREYALEGIYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAERNAFKESSIANSRRPPSPPISVSSAKSNFVFQPLDEYPTSSSSGGGGGGGGFSNTVDDPDVWRPPSRDTSRRPQAARNLKKDGAWARGATSRTSTTGAATNANARGGARLSRVNSGTRGSAAAKKGNASGKSSKTDSNGDGDDGKSKRPQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNMDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA* | 535 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lan6g2080 | 534 | Hamap | Meiotic spindle formation protein mei-1 [mei-1]. | 6 | 534 | IPR028596 | GO:0008017|GO:0008568|GO:0051013 | |
Lan6g2080 | 534 | Pfam | ATPase family associated with various cellular activities (AAA) | 286 | 423 | IPR003959 | GO:0005524|GO:0016887 | |
Lan6g2080 | 534 | PANTHER | AAA DOMAIN-CONTAINING | 4 | 534 | - | - | |
Lan6g2080 | 534 | MobiDBLite | consensus disorder prediction | 162 | 209 | - | - | |
Lan6g2080 | 534 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 246 | 531 | IPR027417 | - | |
Lan6g2080 | 534 | Gene3D | - | 244 | 524 | IPR027417 | - | |
Lan6g2080 | 534 | MobiDBLite | consensus disorder prediction | 210 | 231 | - | - | |
Lan6g2080 | 534 | SMART | AAA_5 | 282 | 425 | IPR003593 | - | |
Lan6g2080 | 534 | Gene3D | - | 1 | 79 | - | - | |
Lan6g2080 | 534 | MobiDBLite | consensus disorder prediction | 108 | 231 | - | - | |
Lan6g2080 | 534 | PANTHER | KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 | 4 | 534 | - | - | |
Lan6g2080 | 534 | CDD | AAA | 280 | 423 | - | - | |
Lan6g2080 | 534 | MobiDBLite | consensus disorder prediction | 108 | 123 | - | - | |
Lan6g2080 | 534 | Gene3D | - | 424 | 510 | - | - | |
Lan6g2080 | 534 | ProSitePatterns | AAA-protein family signature. | 395 | 414 | IPR003960 | GO:0005524|GO:0016887 | |
Lan6g2080 | 534 | Pfam | AAA+ lid domain | 445 | 486 | IPR041569 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lan6g2080 | Lan-Chr6 | 31419598 | 31423479 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lan6g2080 | 238 | 526 | Calmodulin-binding Proteins | AT3G56690 | 40.000 | 6.60e-51 | 186 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lan6g2080 | K07767 | - | rcu:8271350 | 830.091 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lan6g2080 | 6 | 31419598 | 31423479 | Lan10g0174 | 10 | 1119581 | 1122120 | LSH | |
Lan6g2080 | 6 | 31419598 | 31423479 | Lan3g0164 | 3 | 1056462 | 1060149 | LSH | |
Lan6g2080 | 6 | 31419598 | 31423479 | Lan10g0225 | 10 | 1424706 | 1428587 | LSH | |
Lan6g2080 | 6 | 31419598 | 31423479 | Lan8g1607 | 8 | 23038369 | 23043003 | PCT | |
Lan6g2080 | 6 | 31419598 | 31423479 | Lan13g0427 | 13 | 3069563 | 3074973 | PCT | |
Lan8g1607 | 8 | 23038369 | 23043003 | Lan6g2080 | 6 | 31419598 | 31423479 | PCT | |
Lan13g0427 | 13 | 3069563 | 3074973 | Lan6g2080 | 6 | 31419598 | 31423479 | PCT |