Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2080 ATGAGTGGAGCTTTAGCAGGGTTACAAGATCACCTCAAATTAGCAAGAGAATACGCACTCGAAGGAATCTACGACACTTCAATCATCTTCTTCGATGGCGCCATTGCACAAATCAACAAGCATTTGAATAGTGTTGATGATCCGTTAATCCGTTCAAAATGGATGAACGTGAAGAAAGCACTATCTGAAGAAACTGAAGTAGTGAAGCAACTAGATGCGGAGAGAAATGCATTTAAGGAAAGTTCAATTGCAAATTCAAGAAGGCCTCCTTCACCACCGATATCAGTTTCTTCTGCTAAATCTAATTTTGTATTTCAGCCGTTGGATGAGTATCCGACTTCGTCATCATCGGGCGGAGGTGGAGGTGGAGGTGGTTTTAGTAATACGGTGGATGATCCAGATGTGTGGAGGCCGCCGAGTCGAGATACTTCTAGAAGACCACAGGCTGCGAGGAATTTGAAGAAGGATGGCGCGTGGGCGCGTGGTGCTACTTCCAGAACATCAACAACGGGTGCTGCGACAAATGCTAATGCTCGTGGTGGTGCGAGGCTTAGTAGGGTTAACTCTGGAACTCGAGGATCGGCCGCTGCGAAGAAAGGGAATGCTTCTGGAAAGTCCAGTAAGACAGATTCAAATGGGGATGGTGATGATGGAAAGTCAAAGAGGCCACAATATGAAGGTCCCGATCCCGACTTGGCTGAAATGCTTGAAAGAGATGTCTTAGAAACCTCTCCTGGAGTCAGATGGGATGATGTTGCCGGCCTCTCCGAAGCCAAAAGGCTTCTAGAAGAAGCTGTTGTTCTTCCACTATGGATGCCTGAGTATTTCCAGGGAATTAGGAGACCGTGGAAAGGTGTTCTCATGTTTGGTCCTCCGGGAACTGGGAAGACACTTCTTGCTAAAGCTGTTGCTACTGAATGTGGTACCACTTTCTTTAATGTTTCTTCTGCTACTTTAGCTTCTAAATGGCGTGGAGAAAGTGAGCGCATGGTACGGTGTTTGTTTGATCTTGCAAGAGCATATGCACCAAGTACAATTTTCATTGATGAAATTGATTCTCTATGCAATGCTAGAGGGGCTTCCGGGGAGCATGAATCGTCCAGAAGGGTAAAGTCTGAACTTTTAGTTCAGGTTGATGGTGTAAATAATACTTCGACGAATGAAGATGGTAGCCGTAAAATAGTAATGGTTTTGGCAGCCACTAACTTCCCGTGGGACATAGATGAGGCACTAAGAAGAAGGCTGGAAAAGCGTATATATATTCCTCTTCCAAATTTTGAGAGTCGTAAAGAGCTGATCCGTATCAATTTGAAGACTGTAGAGGTGGCCACCGATGTCAATATGGATGATGTGGCTCGCCGAACAGAAGGCTATAGTGGAGATGATCTGACTAATGTCTGTCGTGATGCTTCCTTGAATGGTATGAGGCGTAAGATAGCAGGAAAGACTCGTGATGAGATCAAGAACATGCCCAAAGATGAGATTTCAAATGATCCTGTTGCCATGTGTGATTTTGAAGAAGCTTTGAAGAAAGTCCAACGAAGTGTTTCTCAGGCTGACATTGATCGACATGAGAAGTGGTTTCATGAATTTGGATCAGCATAA 1605 0.448 MSGALAGLQDHLKLAREYALEGIYDTSIIFFDGAIAQINKHLNSVDDPLIRSKWMNVKKALSEETEVVKQLDAERNAFKESSIANSRRPPSPPISVSSAKSNFVFQPLDEYPTSSSSGGGGGGGGFSNTVDDPDVWRPPSRDTSRRPQAARNLKKDGAWARGATSRTSTTGAATNANARGGARLSRVNSGTRGSAAAKKGNASGKSSKTDSNGDGDDGKSKRPQYEGPDPDLAEMLERDVLETSPGVRWDDVAGLSEAKRLLEEAVVLPLWMPEYFQGIRRPWKGVLMFGPPGTGKTLLAKAVATECGTTFFNVSSATLASKWRGESERMVRCLFDLARAYAPSTIFIDEIDSLCNARGASGEHESSRRVKSELLVQVDGVNNTSTNEDGSRKIVMVLAATNFPWDIDEALRRRLEKRIYIPLPNFESRKELIRINLKTVEVATDVNMDDVARRTEGYSGDDLTNVCRDASLNGMRRKIAGKTRDEIKNMPKDEISNDPVAMCDFEEALKKVQRSVSQADIDRHEKWFHEFGSA* 535
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2080 534 Hamap Meiotic spindle formation protein mei-1 [mei-1]. 6 534 IPR028596 GO:0008017|GO:0008568|GO:0051013
Lan6g2080 534 Pfam ATPase family associated with various cellular activities (AAA) 286 423 IPR003959 GO:0005524|GO:0016887
Lan6g2080 534 PANTHER AAA DOMAIN-CONTAINING 4 534 - -
Lan6g2080 534 MobiDBLite consensus disorder prediction 162 209 - -
Lan6g2080 534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 246 531 IPR027417 -
Lan6g2080 534 Gene3D - 244 524 IPR027417 -
Lan6g2080 534 MobiDBLite consensus disorder prediction 210 231 - -
Lan6g2080 534 SMART AAA_5 282 425 IPR003593 -
Lan6g2080 534 Gene3D - 1 79 - -
Lan6g2080 534 MobiDBLite consensus disorder prediction 108 231 - -
Lan6g2080 534 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A1 4 534 - -
Lan6g2080 534 CDD AAA 280 423 - -
Lan6g2080 534 MobiDBLite consensus disorder prediction 108 123 - -
Lan6g2080 534 Gene3D - 424 510 - -
Lan6g2080 534 ProSitePatterns AAA-protein family signature. 395 414 IPR003960 GO:0005524|GO:0016887
Lan6g2080 534 Pfam AAA+ lid domain 445 486 IPR041569 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lan6g2080 Lan-Chr6 31419598 31423479 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2080 238 526 Calmodulin-binding Proteins AT3G56690 40.000 6.60e-51 186
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2080 K07767 - rcu:8271350 830.091
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2080 6 31419598 31423479 Lan10g0174 10 1119581 1122120 LSH
Lan6g2080 6 31419598 31423479 Lan3g0164 3 1056462 1060149 LSH
Lan6g2080 6 31419598 31423479 Lan10g0225 10 1424706 1428587 LSH
Lan6g2080 6 31419598 31423479 Lan8g1607 8 23038369 23043003 PCT
Lan6g2080 6 31419598 31423479 Lan13g0427 13 3069563 3074973 PCT
Lan8g1607 8 23038369 23043003 Lan6g2080 6 31419598 31423479 PCT
Lan13g0427 13 3069563 3074973 Lan6g2080 6 31419598 31423479 PCT