Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2072 ATGGAATCTCAATCTCAAAAAAGATTCAAACTTTCATCACCATCTTCATCAACATTCACAAACCCAATTCCAAATCATGCTCTTTCTGTTGAAGATGCTCATGATTTTTATAAGACACAACTTTGCAGAAAATTCAGTGAGGGTTTTTGCACTTTTGGTTCTCAATGCAAATATGCTCATGGCATTGCAGAACTTAAACCAAGAAGGCAACAACAACAACAACAACAAAATCAACTTTGTAGAATGTTTCTTCACAACAAACAATGCTCTTATGGTCATAACTGTCGTTTCATTCATGTTAATGCTAATCAAAACATTTCTCATGATGGATCACAACCACAACTAGAGAAACTTGATGGCTACTCTTCTGCAAAATGCACTACAATGCAAACTTCTAATGCTGCTGCAAATGTCTCAACTGGTTCTTTGCAAAAGAATGAACCATCTCCATACATTTATCATAGAGAACATCCACAACTACATCCTGCAAAATGCAGGGTAATGCAAACTTCTACTGCTGCTACAAATGCCTCAGCCACAAGTTCTTTACACAAGTATAAAGAAAATGGTGTAACCAAGTTCATATTCAAGGGAAATAACCTACAAAAGATCAATGGCATATATGGTGATTGGATTTAA 639 0.3552 MESQSQKRFKLSSPSSSTFTNPIPNHALSVEDAHDFYKTQLCRKFSEGFCTFGSQCKYAHGIAELKPRRQQQQQQQNQLCRMFLHNKQCSYGHNCRFIHVNANQNISHDGSQPQLEKLDGYSSAKCTTMQTSNAAANVSTGSLQKNEPSPYIYHREHPQLHPAKCRVMQTSTAATNASATSSLHKYKENGVTKFIFKGNNLQKINGIYGDWI* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2072 212 ProSiteProfiles Zinc finger C3H1-type profile. 74 102 IPR000571 GO:0046872
Lan6g2072 212 Gene3D - 71 104 - -
Lan6g2072 212 Gene3D - 31 68 - -
Lan6g2072 212 SMART c3hfinal6 36 62 IPR000571 GO:0046872
Lan6g2072 212 SMART c3hfinal6 75 101 IPR000571 GO:0046872
Lan6g2072 212 SUPERFAMILY CCCH zinc finger 35 66 IPR036855 GO:0046872
Lan6g2072 212 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g2072 212 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 37 61 IPR000571 GO:0046872
Lan6g2072 212 ProSiteProfiles Zinc finger C3H1-type profile. 36 63 IPR000571 GO:0046872
Lan6g2072 212 Pfam CCCH-type zinc finger 79 99 IPR041367 -
Lan6g2072 212 PANTHER CCCH ZINC FINGER/TIS11-RELATED 31 211 IPR045877 GO:0003729
Lan6g2072 212 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE FAMILY PROTEIN 31 211 - -
Lan6g2072 212 SUPERFAMILY CCCH zinc finger 75 101 IPR036855 GO:0046872
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2072 38 99 C3H Transcription Factor Family AT1G68200 44.444 3.63e-12 62.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lan6g2072 zf-CCCH 2.7e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2072 - K15308 lang:109351184 426.017