Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2051 ATGGAGCAATCATTGGAGGATTGGCCTCTTCATTTGATAATGGAAATGGGTCAGGATGATGATTTCTTAGAGCAATGTTTCAATGATGAGGATAATGATGATTTGTTCATCAGAAACATCCTACATGATCCAGCTTTCTCTTCTGAAAGTGAAACTCAATCTCTTCACAATCCCTATAATTCCAATATTGTCCAAAACAACTTCACCACCACAACCACAATTACGGACACAAAAGACAATATGATCACTGATGAAATCACATGCTTAGATAGGTCAGGAAATAGGCTTCTGAACTCCTCTACTCCGAAGTCATACATTTTGTCCTTTGATAACTCAACCATAATACCAGCTACCCCAGAACCTATCCTTGGTGATGAGAAAATTATAGGAATATGTTCTTCTAAATCTAATAATTCACCTTTGTCCACTAGAAAAAGGACATTGGAAAATAGAAACATTGAACCAAAACCAAAGGCCAATAATTTCCAAGAAGGAAAGAAGAATAGAAGTGATTCTAAGACTATGGATCACATAATTGCTGAGAGGAAAAGGAGACAAGAACTTACTGAGAAGTTCATAGCACTTTCAGCTACTATTCCTGACTTGAAGAAGACAGACAAGGTTTCTATACTTCATGAAGCTATCAATTACGTGAAACAACTTCAAGAACGTGTCTCTGAGCTAGAAAAAGTGAACAACAAGGGTTACAATGAATCAATTATATTCATAAATAAGATTGAAATATTTGGAGATGAAAATGGCACTTTTAGTGAAACAAGTTCTGAGGATTGTTGTAGACCCATTATTGAGTTACTCCCTGATGTTGAAGCAAGAGTTTTTGGGAATGAAGTAGTTATTGAGATTCATTGTGACAAAGAAAATGGCATTGAGTATCAAATATTGGAGCAGCTTCAAAATTTTCATCTTTCTGTCACTGGTAGCAGTGTGTTACCCTTTGGTAATTCTACTCTTGGTATTACTATTATAGCTCAGATGTGTGACGAGTACAAAATGACAGTGAATGATCTAGTGAAAAATCTAAGGCAAGTTCTATTGAAAAACATACCTTGTAATACAGATCCATTCTACTCTACACTCAGATATCTTTAG 1110 0.3541 MEQSLEDWPLHLIMEMGQDDDFLEQCFNDEDNDDLFIRNILHDPAFSSESETQSLHNPYNSNIVQNNFTTTTTITDTKDNMITDEITCLDRSGNRLLNSSTPKSYILSFDNSTIIPATPEPILGDEKIIGICSSKSNNSPLSTRKRTLENRNIEPKPKANNFQEGKKNRSDSKTMDHIIAERKRRQELTEKFIALSATIPDLKKTDKVSILHEAINYVKQLQERVSELEKVNNKGYNESIIFINKIEIFGDENGTFSETSSEDCCRPIIELLPDVEARVFGNEVVIEIHCDKENGIEYQILEQLQNFHLSVTGSSVLPFGNSTLGITIIAQMCDEYKMTVNDLVKNLRQVLLKNIPCNTDPFYSTLRYL* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2051 369 MobiDBLite consensus disorder prediction 139 174 - -
Lan6g2051 369 Pfam Helix-loop-helix DNA-binding domain 176 222 IPR011598 GO:0046983
Lan6g2051 369 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 171 237 IPR036638 GO:0046983
Lan6g2051 369 PANTHER BHLH TRANSCRIPTION FACTOR 4 354 - -
Lan6g2051 369 Coils Coil 211 238 - -
Lan6g2051 369 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983
Lan6g2051 369 SMART finulus 178 227 IPR011598 GO:0046983
Lan6g2051 369 PANTHER HELIX LOOP HELIX DNA-BINDING DOMAIN PROTEIN 4 354 - -
Lan6g2051 369 MobiDBLite consensus disorder prediction 160 174 - -
Lan6g2051 369 Gene3D - 163 236 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2051 Lan-Chr6 31202618 31206042 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2051 153 351 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 40.976 3.33e-42 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g2051 HLH 2.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2051 - - aprc:113856039 340.117