Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2047 ATGGACCTTCAAAGGTCAGAACCATTTTCAGACACTCCACTATGCTCAAAACCATTATTGGATCTAAGTCTCTCTAGTAAAAGAGAATCATCAAATGAAAGCTCAAAGGCAGAACTCAACCTTATCAACTACTTTGATACAAATTCATCAATGAACTCCTCAGAATCTAGCCATGGTAATGAAATGGAGCCAAGGATTTTTGCATGCAACTATTGCCAAAGGAAATTCTATAGTTCACAAGCACTTGGAGGACACCAAAATGCACACAAACGTGAAAGAAGTTTTGCAAAAAGAGGACACAAAACTGGTGCTGCAGTTTTAGTAGATTTTGGACACAGGTTCTCAAACATGGCTTCATTACCTTTGCATGGCTCATATAATAGATCACTTGGAATTCAGGTGCATTCTATGATTAACAAACCTTCTTATCAAACACCCTTTTATGGTTTGTCACATTCTCAAGGCCTAAATGGTTGGAAAAGGCACCATATGGATATAAAACCAGCCATTGGAAATCTTCATGTTGGGGCAGAAACTGAACCATCTTTGGTTGGTGCTGGCATAACAAGGTTGGGTATGTTTTCTCATAGTATTGTTCCAGAGGGATATGGAGGTAACTGGTTTGCAAGTATAAACCATTTGAAGACTAAACAAGAGGAGGTGCAAGTGCAACAACTTGACTTGTCTCTCAAACTCTAA 699 0.3877 MDLQRSEPFSDTPLCSKPLLDLSLSSKRESSNESSKAELNLINYFDTNSSMNSSESSHGNEMEPRIFACNYCQRKFYSSQALGGHQNAHKRERSFAKRGHKTGAAVLVDFGHRFSNMASLPLHGSYNRSLGIQVHSMINKPSYQTPFYGLSHSQGLNGWKRHHMDIKPAIGNLHVGAETEPSLVGAGITRLGMFSHSIVPEGYGGNWFASINHLKTKQEEVQVQQLDLSLKL* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2047 232 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 94 IPR013087 -
Lan6g2047 232 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lan6g2047 232 Gene3D Classic Zinc Finger 45 108 - -
Lan6g2047 232 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 17 232 - -
Lan6g2047 232 SUPERFAMILY beta-beta-alpha zinc fingers 64 95 IPR036236 -
Lan6g2047 232 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 17 232 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2047 Lan-Chr6 31180750 31181559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2047 21 232 C2H2 Transcription Factor Family AT1G80730 41.202 5.45e-38 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g2047 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2047 - - gmx:102666245 252.677