Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lan6g2046 | ATGTACAGCAATTTCAAGGAACAAGCAATCGAGTACGTGAAACAAGCCGTACACGAAGACAATGCTGGAAACTACGCAAAAGCTTTCCCTCTATACATGAACGCTTTGGAATATTTCAAAACGCATCTCAAATACGAGAAAAACCCTAAGATCAGAGAAGCTATAACTCAGAAATTCACCGATTACCTTCGCCGTGCTGAGGAGATCAGAGCTGTGCTCGATCAAGGTGGGCCCGGGCCTGCTTCTAACGGAGACGCTGCGGTTGCTACGAGGCCCAAGACAAAGCCCAAGGACGGTGGTGGTGAAGGTGATGGTGAGGAGGCGAAGCTTCGGGCCGGGCTGAATTCGGCGATTATAAGGGAGAAACCGAATGTTAATTGGAATGATGTTGCTGGATTGGAGAGTGCTAAGCAGGCTTTACAAGAGGCTGTTATTTTGCCTGTGAAATTTCCTCAATTCTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGGCCTCCTGGAACAGGGAAATCATATTTAGCCAAGGCTGTTGCTACAGAAGCTGACTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAATGGATGGGTGAAAGTGAAAAGCTGGTTTCAAACCTTTTCCAAATGGCTCGAGAAAGTGCCCCTTCTATCATATTTATTGATGAAATAGATTCCCTATGTGGACAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTGGTTCAGATGCAGGGTGTTGGAAACAATGATCAGAAAGTTCTCGTACTTGCAGCCACAAATACACCCTATGCTTTGGACCAGGCAATAAGGCGGCGTTTTGATAAGCGTATATATATTCCACTACCAGATTTGAAGGCTCGCCAACACATGTTCAAGGTGCATCTAGGAGATACTCCTCATAACTTGACTGAAAGTGATTTTGGACACTTGGCTAGAAAGACAGAGGGGTTTTCTGGTTCAGATATATCTGTTTGTGTGAAGGACGTTTTATTCGAACCTGTTCGCAAAACGCAAGATGCTATGTTCTTCTTTAAGAATCCCGAGGGTATGTGGATCCCATGTGGACCAAAACAACAGGGTTCAGTACAAATCACAATGCAAGATCTTGCTACTCAAGGACTTGCTTCCAAGATTCTTCCACCTCCCATTACAAGAACTGATTTTGACAAGGTACTAGCTAGACAAAGGCCTACAGTAAGCAAAGGTGACCTTGAGGTTCATGAGAGATTCACCAAGGAGTTTGGAGAGGAGGGTTAA | 1296 | 0.4421 | MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTDYLRRAEEIRAVLDQGGPGPASNGDAAVATRPKTKPKDGGGEGDGEEAKLRAGLNSAIIREKPNVNWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFIDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTESDFGHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGSVQITMQDLATQGLASKILPPPITRTDFDKVLARQRPTVSKGDLEVHERFTKEFGEEG* | 432 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lan6g2046 | 431 | MobiDBLite | consensus disorder prediction | 73 | 107 | - | - | |
| Lan6g2046 | 431 | SUPERFAMILY | MIT domain | 2 | 81 | IPR036181 | - | |
| Lan6g2046 | 431 | Pfam | ATPase family associated with various cellular activities (AAA) | 165 | 294 | IPR003959 | GO:0005524|GO:0016887 | |
| Lan6g2046 | 431 | PANTHER | AAA-TYPE ATPASE FAMILY PROTEIN | 1 | 431 | - | - | |
| Lan6g2046 | 431 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 123 | 427 | IPR027417 | - | |
| Lan6g2046 | 431 | MobiDBLite | consensus disorder prediction | 91 | 107 | - | - | |
| Lan6g2046 | 431 | Gene3D | - | 6 | 75 | - | - | |
| Lan6g2046 | 431 | Pfam | MIT (microtubule interacting and transport) domain | 7 | 70 | IPR007330 | - | |
| Lan6g2046 | 431 | ProSitePatterns | AAA-protein family signature. | 266 | 285 | IPR003960 | GO:0005524|GO:0016887 | |
| Lan6g2046 | 431 | Gene3D | - | 296 | 411 | - | - | |
| Lan6g2046 | 431 | SMART | AAA_5 | 160 | 296 | IPR003593 | - | |
| Lan6g2046 | 431 | PANTHER | AAA DOMAIN-CONTAINING | 1 | 431 | - | - | |
| Lan6g2046 | 431 | Gene3D | - | 123 | 419 | IPR027417 | - | |
| Lan6g2046 | 431 | SMART | smart | 2 | 78 | IPR007330 | - | |
| Lan6g2046 | 431 | Pfam | Vps4 C terminal oligomerisation domain | 364 | 428 | IPR015415 | - | |
| Lan6g2046 | 431 | CDD | AAA | 131 | 294 | - | - | |
| Lan6g2046 | 431 | CDD | MIT_VPS4 | 4 | 77 | IPR045253 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Lan6g2046 | Lan-Chr6 | 31169837 | 31174478 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Lan6g2046 | 159 | 352 | Calmodulin-binding Proteins | AT3G56690 | 36.224 | 1.71e-34 | 134 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lan6g2046 | K12196 | - | csv:101218878 | 791.956 |