Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2024 ATGCGAGATGGATCTAAGTCCCTGGCCAAAATACTGGCAAAGTGGAAAGAATATAATGCCCAGCTTGATTCCAACAACGATGGTGATAAGCCGATTCGAAAAGTTCCTGCTAAGGGATCAAGGAAGGGGTGTATGAAAGGTAAAGGGGGACCGGAGAATTTGCGATGTAACTATAGAGGTGTTAGGCAAAGGACTTGGGGAAAATGGGTTGCTGAAATCCGGGAGCCAAACAGAGGGAATAGGCTTTGGTTAGGTACTTTTCCTAGTGCCACTGGTGCTGCTCTTGCTTATGATGAAGCAGCAAGGGCAATGTATGGCTCTTGCGCTCGTCTCAACTTTCCCAATGTTTCCGTTTCTAGTTTCTCTGAAGAATTTCCAAATGATTCTCTTGGCGAAAATCGTTCAGGTTCCTCGATGGCAGTCTTAGCAAACACCGAGTCTGCGGTATCACCAAACACAGAAGAGGATATTGATATGGAACACATTTCCTTATCCTTAACTATAAAACATGATAATGGAGAAGGTGAATCAGGGTCTAGTTCTTCTCCTCCGTCATCCTCGTGA 564 0.4486 MRDGSKSLAKILAKWKEYNAQLDSNNDGDKPIRKVPAKGSRKGCMKGKGGPENLRCNYRGVRQRTWGKWVAEIREPNRGNRLWLGTFPSATGAALAYDEAARAMYGSCARLNFPNVSVSSFSEEFPNDSLGENRSGSSMAVLANTESAVSPNTEEDIDMEHISLSLTIKHDNGEGESGSSSSPPSSS* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2024 187 MobiDBLite consensus disorder prediction 167 187 - -
Lan6g2024 187 MobiDBLite consensus disorder prediction 170 187 - -
Lan6g2024 187 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 3 152 - -
Lan6g2024 187 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 3 152 - -
Lan6g2024 187 SMART rav1_2 57 120 IPR001471 GO:0003700|GO:0006355
Lan6g2024 187 MobiDBLite consensus disorder prediction 23 48 - -
Lan6g2024 187 PRINTS Ethylene responsive element binding protein signature 58 69 IPR001471 GO:0003700|GO:0006355
Lan6g2024 187 PRINTS Ethylene responsive element binding protein signature 80 96 IPR001471 GO:0003700|GO:0006355
Lan6g2024 187 CDD AP2 56 116 IPR001471 GO:0003700|GO:0006355
Lan6g2024 187 SUPERFAMILY DNA-binding domain 57 114 IPR016177 GO:0003677
Lan6g2024 187 Gene3D AP2/ERF domain 57 116 IPR036955 GO:0003700|GO:0006355
Lan6g2024 187 Pfam AP2 domain 56 106 IPR001471 GO:0003700|GO:0006355
Lan6g2024 187 ProSiteProfiles AP2/ERF domain profile. 57 114 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2024 Lan-Chr6 30976886 30978871 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2024 4 114 AP2-EREBP Transcription Factor Family AT2G40350 66.087 9.12e-51 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lan6g2024 AP2 1.5e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2024 - K09286 gmx:100499747 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g2024 6 30976886 30978871 Lan14g0864 14 15301438 15305713 PCT
Lan14g0864 14 15301438 15305713 Lan6g2024 6 30976886 30978871 PCT