Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g2012 ATGGAATCGGAGAATTTGGTGAAACAAGAATTGGAGGAATTGCAGAAACAATTGGGGAAAAAGCAACAGTTCGAAAACGCTGTCTCATCTCTTAAATCTCTTCTTCAACGATCATACCAATCAGCTTCTCCCTCTCTTCGAAAATCTTTTTATACAGTTATATGCCGAGTTTCTACTGTGTTGAAGACGAGGTATACAGCACCAGGTTTCTGGAATGCCGGCCTGGGCCTTTTCGAGCAGGCTCATATGCTTGTTTCTGAATCTTCTGAGAAGCAACACTTGAAGGCTTGCATTGCTCAGGCCAGGGAACATTTGCATCTAGAAGACAACCCATCACAACCTTTGCAGCCACGGCAGAGTCATACAAATGGAGGATATCTTTTTGAGGGGCACCTTACTGTTGATCCGGAGCCACCACAGCCTCAATGGTTGGTTCAGGAAAACCTCTTGTCAACAGCTGCTACTCTATTTGCTGCTGAAACCTCTCAAGGTTCAGGAGCAAATGATACCACGCCAGAGAACACTGCCAATGTGCTTCAAGAGCTTTTAACTAGATTGGAAGAAGTTGTGCCTCTGATGGTGGATGATGGTCCTGTAGCTCCAAGAGTACCTCCTGCCAGTAAAGAAGTCGTGGCAAAACTTCCGGTCATTACTCTCACGGAGGAAATACTGGCTAAGCTGGGGAAAGATGCAGAGTGTGCAATTTGCAGGGAAGAGTTGGTTTTAAATGACAAAATGCAAGAGTTGCCTTGCAAGCACACGTTCCACCCACCATGTTTAAAGCCATGGCTGGATGAGCACAATTCTTGTCCGATCTGTCGGTATGAGCTACAAACTGATGATCACGCCTATGAAAGCTGGAAGGAGCGTGAAAAGGAAGCTGAAGAAGAGAGGAAAGGTGCCGAAAATGCCATTCGAGGTGGTGAATATATGTATGTTTAG 942 0.4554 MESENLVKQELEELQKQLGKKQQFENAVSSLKSLLQRSYQSASPSLRKSFYTVICRVSTVLKTRYTAPGFWNAGLGLFEQAHMLVSESSEKQHLKACIAQAREHLHLEDNPSQPLQPRQSHTNGGYLFEGHLTVDPEPPQPQWLVQENLLSTAATLFAAETSQGSGANDTTPENTANVLQELLTRLEEVVPLMVDDGPVAPRVPPASKEVVAKLPVITLTEEILAKLGKDAECAICREELVLNDKMQELPCKHTFHPPCLKPWLDEHNSCPICRYELQTDDHAYESWKEREKEAEEERKGAENAIRGGEYMYV* 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g2012 313 SUPERFAMILY RING/U-box 227 280 - -
Lan6g2012 313 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 7 307 - -
Lan6g2012 313 Coils Coil 7 27 - -
Lan6g2012 313 SMART ring_2 233 273 IPR001841 -
Lan6g2012 313 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 199 280 IPR013083 -
Lan6g2012 313 Pfam Ring finger domain 232 274 IPR001841 -
Lan6g2012 313 ProSiteProfiles Zinc finger RING-type profile. 233 274 IPR001841 -
Lan6g2012 313 PANTHER ABI3-INTERACTING PROTEIN 2-1 7 307 - -
Lan6g2012 313 Coils Coil 284 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g2012 Lan-Chr6 30904079 30906971 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g2012 7 313 C3H Transcription Factor Family AT5G20910 65.798 9.23e-136 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g2012 K16274 - gmx:100798732 524.628