Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1987 ATGAACTCTGATATTTTACCCGCTACGGCGTCGTTTTGGTGCTACAGCTGCACACGCTTCGTTCACCTCATGGACCAACACGACGTCGTTTGCCCCAACTGCCAAAGCGGTTTCGTTGAAGAGATCCACTACGCCGCCCAATCTCCGGCGATGTCTCTCTTCGCCGACGGCCTTCAAACTCCGAGGAGACAAGGTATCCGCCGGAGACGCCGCAACACCGGTAGACGCTCACCGTTCAATCCAGTCATAGTCCTCCGAGGAACCGCAGAAGATGGCGCTGCTGATGGTAACGATGGTAATAGCAGCTTCGAATTGTACTACGACGACGGCGATGGTTCCGGTCTCCGACCTCTGCCACCGACGATGTCAGAGTTTTTGTTAGGTTCAGGTTTCGATCGGTTACTTGAGCAGTTTTCGCAGATCGAGGTCAACGGTTTCGGCCGAATCGGTAACCCGCCGGCGTCAAAAGCGGCGGTGGAGTCTATGCCGACGGTTGAGATCGCGGAACAACACGTTGACGTAGAAACGCACTGTGCGGTGTGCAAAGAAGCTTTCGAGCTAGGTTCTGAAGCGCGTGAGATGCCGTGCAACCATCTCTACCATTCCGATTGCATCATTCCATGGCTTTCGATGCGAAACTCGTGCCCTGTGTGCCGTCACGAGTTACCAGCCGATCAAAATCCAATGGAAAACAGAACCAACGGTCAGATCGAAGAAGAAGCGGTCGGATTAATCATATGGCGGTTACCGGGCGGCGGTTTCGCCGTCGGGAGATTTACCGGCGGCCAGAGAAACGCGGAGAATAATTTGCCGCTGGTGTATACAGAAATGGACGGTAGTAGAAATTCGAACGAAGGTTCTAGAAGAATTTCTAGGGATATTGGAAGTAGTAGAGTTAGAGAGAGGGGTAGAATTGGAAGGTTTTTTCGTAATTTGTCATCATTGTTTAGGTCTTCACATTCTTCTTCTATGGATAGAAGCCTTAGTCATTGGAGTTCAGTGTTCAATTGGAGAAGCAGAAGAAGTTTGGTGTTGGAAGATTAA 1044 0.5086 MNSDILPATASFWCYSCTRFVHLMDQHDVVCPNCQSGFVEEIHYAAQSPAMSLFADGLQTPRRQGIRRRRRNTGRRSPFNPVIVLRGTAEDGAADGNDGNSSFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFSQIEVNGFGRIGNPPASKAAVESMPTVEIAEQHVDVETHCAVCKEAFELGSEAREMPCNHLYHSDCIIPWLSMRNSCPVCRHELPADQNPMENRTNGQIEEEAVGLIIWRLPGGGFAVGRFTGGQRNAENNLPLVYTEMDGSRNSNEGSRRISRDIGSSRVRERGRIGRFFRNLSSLFRSSHSSSMDRSLSHWSSVFNWRSRRSLVLED* 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1987 347 ProSiteProfiles Zinc finger RING-type profile. 178 219 IPR001841 -
Lan6g1987 347 Pfam Ring finger domain 177 219 IPR001841 -
Lan6g1987 347 CDD RING-H2_RNF126_like 178 219 - -
Lan6g1987 347 Pfam Protein of unknown function (DUF1117) 242 333 IPR010543 -
Lan6g1987 347 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Lan6g1987 347 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 9 304 - -
Lan6g1987 347 SMART ring_2 178 218 IPR001841 -
Lan6g1987 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 225 IPR013083 -
Lan6g1987 347 PANTHER OS05G0110000 PROTEIN 9 304 - -
Lan6g1987 347 SUPERFAMILY RING/U-box 158 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1987 Lan-Chr6 30740158 30741361 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1987 117 230 C3H Transcription Factor Family AT5G01980 48.246 8.69e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1987 - - aip:107612938 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1987 6 30740158 30741361 Lan7g0227 7 1406630 1407994 PCT
Lan6g1987 6 30740158 30741361 Lan8g1731 8 24078358 24079522 PCT
Lan7g0227 7 1406630 1407994 Lan6g1987 6 30740158 30741361 PCT
Lan8g1731 8 24078358 24079522 Lan6g1987 6 30740158 30741361 PCT