Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1979 ATGGGAATTTGTTTGAGCAATCAAATTAAAGCTGAAAGTCCATATAGTACTGGGCTAAACTCAAAGCATGTGAGTACAGATGGAACTGATCTCAGCGGAAATAATAGTAAGGTCTCGGTACCTCGGAGCGAGGGTGAGATCTTGCAGTCATCCAATTTAAAGAGCTTTACTTTGGCCGAACTTAAGACAGCAACCAGAAATTTCCGCCCGGACAGTGTGTTAGGAGAAGGTGGTTTCGGATCGGTTTTTAAGGGGTGGATTGATGAGAAAACATTGGCTGCTGCCAAACCCGGCACTGGTATTGTTATAGCTGTCAAAAGACTTAATCAAGATGGCATACAAGGTCACAAGGAGTGGTTGGCTGAAGTAAACTTTCTAGGACAGTTTTCTCATCCGCATCTTGTGAGATTGATTGGATATTGCCTTGAAGATGAACACCACCTTCTCGTCTACGAATTTATGCCTCGTGGAAGCTTGGAGAATCATTTGTTTAGGAGAGGCTCATATTATCAACCACTTTCTTGGAGCCTCCGGTTGAAGGTTGCTCTCGATGCTGCCAAAGGACTTGCATTTCTGCACAATGCTGAAAACAAAGTCATATATCGCGATTTCAAGACTTCAAATATCCTACTGGATTCGAACTATAAAGCAAAACTTTCGGATTTCGGGCTAGCAAAGGATGGACCAACAGGCGACAAAAGTCATGTCTCAACCAGGGTAATGGGAACCTATGGATATGCAGCTCCGGAATATATAGCCACTGGTCATCTTACTACTAAGAGTGATGTCTATAGTTTCGGAGTTGTCCTGCTAGAAATGATATCTGGCAAGCGAGCCGTTGACACGAACCGACCACCGGGAGAACACAATTTGGTGGAATGGGCTAAACCATACCTGGCTAACAAACGCAAGATTTTCTACGTGTTGGATAGTCGTCTTGAAGGGCAGTACTCAACAGACCAGGCTCATAAGGTATCGACCCTTGCTTTGCGATGCCTATCAACAGAAATCAAGCATCGACCGAACATGGATAAAGTTGTCACAATTTTGGAAGAGCTGCAAGTTCCTGATGTAAATGGAGGCAATCAAAGTCCTTCTGTTGATCGGTCACGGGCTCGTAGAAAAAGCGCTGATGATGCTAACCATGGAAGGGTCCCCACGCCTTATCCTCGACCCTCTGCTTCCCCTCTCTATGCTTGA 1200 0.4492 MGICLSNQIKAESPYSTGLNSKHVSTDGTDLSGNNSKVSVPRSEGEILQSSNLKSFTLAELKTATRNFRPDSVLGEGGFGSVFKGWIDEKTLAAAKPGTGIVIAVKRLNQDGIQGHKEWLAEVNFLGQFSHPHLVRLIGYCLEDEHHLLVYEFMPRGSLENHLFRRGSYYQPLSWSLRLKVALDAAKGLAFLHNAENKVIYRDFKTSNILLDSNYKAKLSDFGLAKDGPTGDKSHVSTRVMGTYGYAAPEYIATGHLTTKSDVYSFGVVLLEMISGKRAVDTNRPPGEHNLVEWAKPYLANKRKIFYVLDSRLEGQYSTDQAHKVSTLALRCLSTEIKHRPNMDKVVTILEELQVPDVNGGNQSPSVDRSRARRKSADDANHGRVPTPYPRPSASPLYA* 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1979 399 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 35 373 - -
Lan6g1979 399 ProSiteProfiles Protein kinase domain profile. 68 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1979 399 SUPERFAMILY Protein kinase-like (PK-like) 46 353 IPR011009 -
Lan6g1979 399 ProSitePatterns Protein kinases ATP-binding region signature. 74 106 IPR017441 GO:0005524
Lan6g1979 399 PANTHER OS01G0588500 PROTEIN-RELATED 35 373 - -
Lan6g1979 399 CDD STKc_IRAK 74 353 - -
Lan6g1979 399 Gene3D Phosphorylase Kinase; domain 1 43 153 - -
Lan6g1979 399 Pfam Protein tyrosine and serine/threonine kinase 72 349 IPR001245 GO:0004672|GO:0006468
Lan6g1979 399 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lan6g1979 399 MobiDBLite consensus disorder prediction 15 39 - -
Lan6g1979 399 Gene3D Transferase(Phosphotransferase) domain 1 154 366 - -
Lan6g1979 399 MobiDBLite consensus disorder prediction 357 399 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1979 Lan-Chr6 30685185 30688226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1979 46 350 Glycoside Hydrolase AT3G07070 50.980 3.57e-105 315
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lan6g1979 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1979 - - gmx:100798404 662.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1979 6 30685185 30688226 Lan10g0093 10 545520 547881 LSH
Lan6g1979 6 30685185 30688226 Lan7g0237 7 1479810 1482627 PCT
Lan7g0237 7 1479810 1482627 Lan6g1979 6 30685185 30688226 PCT