Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1975 ATGAAGCTTTTGAATCCTTATCATGCACCCTCACTCTCCCAATTCACCTTTCAAGCTTCTTCTACATCTCAGTTACCACTACAAACTATGGAGGAAGATGATGAACAATGTTCTCAAATGGTTCATGTTGCCCTCGGTAAATCGTTAGTTAAAGCTTCCAACTTGCTTCAATGGGCTTTCACCCATTTTAAGAACACCAAGATTTGCATTCTTCATGTTTATCAACCTTCTTCTACCATCCCAACTCCATTGGGGAAATTGCCAGCATCCAAGGCTAACCCGGAAATGGTATCTGCTTTTCGAAGGGAGGAAAGAGAACAGACCAGGAATCTTCTGGACAAATACTTGAGCATTTGCCGCGCAGCTAAGGTTAAGGCAAGCATTATCATGACTGAAGCTGGCCAAGTCCAGAAGGGGATTGTTGACTTGGTTATGAGGCATCATATTAGGAAGCTTGTTATCGGAGCCGTGCCGGAGAATTGCATGAAGGTAAAAAGAAATTACGGTAAAGCAAATTACACTGCCAACAATGCTCCCCCATTCTGTGAAATATGGGTGATCTATAAACGTAAACATATTTGGACAAGAGATGCTTCTGAAATACCTAGTTCTTTGTCTTCATGCGCTCAACCTGACATTGAAAATGAAATCATTGAAACCGAAGCCATTTCTTCATCCAAATCATCCAGTTGTAAAAGTTGTTCCTACCAAAATTCTGATGGGGGCTCTTTAGATATTGATTCAGAGGTCACGAAAGAAAGAATTAACAGTCAGCTGACTGAAACACAAAGAGAAGCTGATGCAGCAACAAACGAGGCCTCTACAGGACTACTTAAGTGCAAGAGGTTGGAAATCGAAGCCATGGAGGCCATAAAGAAGGTGAATTTGTTTGAATCTGCTCATGCGCGAGAATTAAAGCTCAGGAAAGAGGTAGAGGATACACTGAGAGCTACAGTAAAAGAACAACAAAAGCTCATGTATGAGAGTGAACAAATTGCTATTGAGTTGCAAAGGACCATGAGAAATATTGCTCTACTAGATAGTCGTGCACAGGAAGCAAACCGTAGGCGAGATGAAGCTGCAGATGAACTATCACTAATTCAAGCATCCATCTCAATCCTATGGCATGAAAGGCAGCAGATCAGGAGACGGAAAATGGAAGCCCTCCAATGGCTTGAGCGGTGGAAAAGTCGTGGACAAGTTGGGGAAGCTTATTGCAATGGGGTCATTGGGATTCCTGAAGAGTTGCCTGAGTTAGCAGAATTTTCACTGTCAGATCTTCAAAATGCAACATGCAATTTTTCTGAGAGCTTTAAAATTTGCCAAGGTGGCTATGGTTGTATTTATAAAGGGGAAATGTTGGGTAGGACTGTTGCTATAAAGAAGTTTCATCCATGTAACGTGCAAGGACCAGCAGAGTTTCATCAAGAGGTTCAAGTTCTTGGTAGTCTCCAGCACCCTCATTTACTGACTTTGCTTGGTGTTTGCCCGGAAGCCTGGTCAATTGTATATGAATACCTTCCAAATGGAACTCTTCAAGACTACCTATTCCGAAAAGGCAACAATTCACCTTTGACATGGAATACACGAGCACGAATAATAGCTGAAATAGCTAGTGCGCTCTGCTTCTTACATTCTTCCAAACCGGAAACTATAATCCATGGTGATCTGAAGCCTGAGGCTATACTTCTTGATTCTTCGCTCAGTTGCAAGATATGCGATTTTGGGTTCTGCAGGCTGGTGACAGAGGAATCTCTGGGTCGTCCTAGTTTCCACTTGAGCACTGAACCAAAGGGTGCTTTAACATACACCGACCCCGAGTTTCAGAGAACTGGAATACTAACTCCCAAGTCTGACATCTTCTCCTTTGGCCTCATCATTTTGCAACTTCTCACCGGTAGGTCTCCAGTGGGATTAGCATTCATTGCACGCAACTCAGTTTCATGTGGAAAATTGTCCTCAATTTTGGATTTTTCTGCCGGAGAATGGCCTTCAGATGTGGCAACACAATTGGTTGAACTGGGATTGCAATGTTGTCAAAAAAATAGTAGAGACAGGCCAGATTTAACGCCTACTCTAGTGAGAGAATTGGATCACTTACACCGTTCAGAAGAGCGACCCGTGCCATCTTTTTTCCTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCAGCAGATGGATTTACCTATGAAGGGGATGCAATACGTGAATGGTTAGAAAATGGACATGATACTTCTCCAATGACTAACTTAAAATTGACTCATCTACTTCTTATTCCCAATCACATGCTTAGACTTTTGATCCAAGACTGGCTTTGCAAATCTTGA 2337 0.4236 MKLLNPYHAPSLSQFTFQASSTSQLPLQTMEEDDEQCSQMVHVALGKSLVKASNLLQWAFTHFKNTKICILHVYQPSSTIPTPLGKLPASKANPEMVSAFRREEREQTRNLLDKYLSICRAAKVKASIIMTEAGQVQKGIVDLVMRHHIRKLVIGAVPENCMKVKRNYGKANYTANNAPPFCEIWVIYKRKHIWTRDASEIPSSLSSCAQPDIENEIIETEAISSSKSSSCKSCSYQNSDGGSLDIDSEVTKERINSQLTETQREADAATNEASTGLLKCKRLEIEAMEAIKKVNLFESAHARELKLRKEVEDTLRATVKEQQKLMYESEQIAIELQRTMRNIALLDSRAQEANRRRDEAADELSLIQASISILWHERQQIRRRKMEALQWLERWKSRGQVGEAYCNGVIGIPEELPELAEFSLSDLQNATCNFSESFKICQGGYGCIYKGEMLGRTVAIKKFHPCNVQGPAEFHQEVQVLGSLQHPHLLTLLGVCPEAWSIVYEYLPNGTLQDYLFRKGNNSPLTWNTRARIIAEIASALCFLHSSKPETIIHGDLKPEAILLDSSLSCKICDFGFCRLVTEESLGRPSFHLSTEPKGALTYTDPEFQRTGILTPKSDIFSFGLIILQLLTGRSPVGLAFIARNSVSCGKLSSILDFSAGEWPSDVATQLVELGLQCCQKNSRDRPDLTPTLVRELDHLHRSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLTHLLLIPNHMLRLLIQDWLCKS* 779
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1975 778 Gene3D Phosphorylase Kinase; domain 1 412 506 - -
Lan6g1975 778 Gene3D Transferase(Phosphotransferase) domain 1 507 707 - -
Lan6g1975 778 Coils Coil 336 370 - -
Lan6g1975 778 Coils Coil 252 272 - -
Lan6g1975 778 CDD STK_N 41 189 - -
Lan6g1975 778 Pfam U-box domain 708 777 IPR003613 GO:0004842|GO:0016567
Lan6g1975 778 Pfam Protein tyrosine and serine/threonine kinase 439 690 IPR001245 GO:0004672|GO:0006468
Lan6g1975 778 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 708 778 IPR013083 -
Lan6g1975 778 ProSiteProfiles U-box domain profile. 707 778 IPR003613 GO:0004842|GO:0016567
Lan6g1975 778 PANTHER OS10G0100500 PROTEIN 25 229 - -
Lan6g1975 778 PANTHER OS10G0100500 PROTEIN 225 777 - -
Lan6g1975 778 CDD RING-Ubox_WDSUB1_like 712 753 - -
Lan6g1975 778 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 53 158 - -
Lan6g1975 778 PANTHER OS02G0152300 PROTEIN 25 229 - -
Lan6g1975 778 PANTHER OS02G0152300 PROTEIN 225 777 - -
Lan6g1975 778 SUPERFAMILY Protein kinase-like (PK-like) 417 693 IPR011009 -
Lan6g1975 778 SUPERFAMILY RING/U-box 703 777 - -
Lan6g1975 778 SMART Ubox_2 711 774 IPR003613 GO:0004842|GO:0016567
Lan6g1975 778 Gene3D HUPs 35 157 IPR014729 -
Lan6g1975 778 ProSiteProfiles Protein kinase domain profile. 434 702 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1975 Lan-Chr6 30654304 30659601 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1975 34 775 U-box Gene Family AT2G45910 37.408 7.07e-168 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lan6g1975 PK_Tyr_Ser-Thr 1.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1975 - - gmx:100788846 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1975 6 30654304 30659601 Lan13g0328 13 2159724 2164958 PCT
Lan13g0328 13 2159724 2164958 Lan6g1975 6 30654304 30659601 PCT