Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1967 ATGGTTCAACAAGCAATGAAAAAAGGTCCATGGACAGAACAAGAGGACTTCAAATTGGTGTACTATGTTGGCTTGTTTGGTGACCGTAAATGGGACCATATAGCTAAGGTTTCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTAAGATGGGTTAATTACCTTCATCCTGGTCTTAAACGAGGGAAGATGACACCTCAAGAAGAGAAACTTGTGCTGGAGCTTCACTCAAAATGGGGAAACAGATGGTCAAGAATTGCTCGCAAGTTACCTGGGCGCACAGACAATGAAATCAAGAATTACTGGAGGACTCACATGAGGAAGATGGCACAAGAGAAAAAGAGAGCACCAATTCCATCACCAACTTCTTCTGGCTGTCATTCTTCAATATCTTCCTCAAGTAATCATGCAGTGGATTCACATGGTTCCAAAAATGCTGGAGAAGAATGCATTTATGACACAAGAGGTCCTAGTCTGAAAGGATTTTCAAGTGAAGTTAACATAGTAGAAGATCAAGAAGGGTTCTCTATGGATGATATATGGAAAGATATTGATATGTCAGAACAGAACATTGTGCAGCCAAACTATGATTATGGTTACAACTTTTCTTGTCCATCAAGGGAGTGTTGTTTAGACCCTCTATGGGTTATGGATGAAGAAAGTATGCTATTCCCAACAAGTGACCCTTATTTTTCTTGCTACATACATGGAAGCACATTTCTAACTGGCTAA 732 0.3975 MVQQAMKKGPWTEQEDFKLVYYVGLFGDRKWDHIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEEKLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTHMRKMAQEKKRAPIPSPTSSGCHSSISSSSNHAVDSHGSKNAGEECIYDTRGPSLKGFSSEVNIVEDQEGFSMDDIWKDIDMSEQNIVQPNYDYGYNFSCPSRECCLDPLWVMDEESMLFPTSDPYFSCYIHGSTFLTG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1967 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Lan6g1967 243 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Lan6g1967 243 MobiDBLite consensus disorder prediction 117 141 - -
Lan6g1967 243 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Lan6g1967 243 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Lan6g1967 243 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Lan6g1967 243 PANTHER TRANSCRIPTION FACTOR MYB48-RELATED 3 223 - -
Lan6g1967 243 Gene3D - 64 107 - -
Lan6g1967 243 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 55 IPR017930 -
Lan6g1967 243 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lan6g1967 243 CDD SANT 63 106 IPR001005 -
Lan6g1967 243 SMART sant 7 57 IPR001005 -
Lan6g1967 243 SMART sant 60 108 IPR001005 -
Lan6g1967 243 Gene3D - 7 60 - -
Lan6g1967 243 CDD SANT 10 55 IPR001005 -
Lan6g1967 243 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 223 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lan6g1967 243 MobiDBLite consensus disorder prediction 110 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1967 Lan-Chr6 30601347 30602954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1967 1 241 MYB Transcription Factor Family AT5G59780 53.516 1.47e-79 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g1967 Myb_DNA-binding 2.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1967 K09422 - tcc:18590753 298.901
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0257 7 1635367 1637006 Lan6g1967 6 30601347 30602954 PCT