Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1962 ATGTTTCCACATTCCAACACTGCATTCTCACGCTCCTCCTCCACCACCACCACCACCACAACACCACCACCACCACCAATGATCCATGACCACCTCCTCTCGTTCTCCGACTCACTGTGGCAAATCAACAACACTTGTAATAATAATAATAATGACAGTGGGACCCACCGCCACTCCCTTTCTACTCTCTTTGCTGAGTTGCTTCACTCCCACCACGCTCCGAAGAGTAATGGAATGCAACATAATCATAACTCAGAAAGTCCATTGTCAAGTGAATGTAATATCATCATAGAAGGGATGAACAGAGCCTATCCATATAGCCCAGAGGAGAAGAAAGTTAGGATTCAGAGATATAGAACCAAGAGAAATCAGAGGAACTTCAAAAAGAAAATTAAGTATGCTTGCAGGAAGACATTGGCCGATAATCGGCCGCGAATTCGAGGAAGGTTTGCGAAGAACGAAGAAATTGGCAAGAATCCTACAGCTCAGTGGAGCCACATTGGTGATGGAGAGGAAGAGGATGAGGAAAATGAGAATTGGGTCAGTATCTTTGATTCTTTAGTTGCTGCAAATCTTGTTCATGAGTCCCTAGACAGTTCCTCATTTGGGTCAGTATCTTTGATTCCTTAG 630 0.4413 MFPHSNTAFSRSSSTTTTTTTPPPPPMIHDHLLSFSDSLWQINNTCNNNNNDSGTHRHSLSTLFAELLHSHHAPKSNGMQHNHNSESPLSSECNIIIEGMNRAYPYSPEEKKVRIQRYRTKRNQRNFKKKIKYACRKTLADNRPRIRGRFAKNEEIGKNPTAQWSHIGDGEEEDEENENWVSIFDSLVAANLVHESLDSSSFGSVSLIP* 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1962 209 ProSiteProfiles CCT domain profile. 111 153 IPR010402 GO:0005515
Lan6g1962 209 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 47 203 IPR045281 GO:0009909
Lan6g1962 209 Pfam CCT motif 113 153 IPR010402 GO:0005515
Lan6g1962 209 PANTHER CCT MOTIF PROTEIN 47 203 - -
Lan6g1962 209 MobiDBLite consensus disorder prediction 1 18 - -
Lan6g1962 209 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1962 Lan-Chr6 30555214 30558128 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1962 99 155 C2C2-CO-like Transcription Factor Family AT5G24930 50.877 9.17e-14 67.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lan6g1962 CCT 1.7e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1962 - - lang:109350989 395.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1962 6 30555214 30558128 Lan10g0112 10 651136 653310 LSH
Lan6g1962 6 30555214 30558128 Lan7g0268 7 1717750 1720045 PCT
Lan7g0268 7 1717750 1720045 Lan6g1962 6 30555214 30558128 PCT