Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1961 ATGAAACCATCATTTCCAAGAGACCCTCGTGGCTCTCTCGAAGTCTTCAATCCTTCTACTTCTTTATCCCACTCGGACGAAATCGCCACCTCACTGGTGACTAAGCCGAAACCACTCTGGAAAACTTGGAAAGACCCGGAGCCACCATGCAGTACTTCTTCTGATGAAATTACCACCACAATCACCGCCGCCAACACCACCTCATGGATGGCACTGAAGGACAACTCAATTCCGGAAGGGGAGTCCGGCAAGGCGGCGCAGAGAGCCGCCGAGTGGGGACTAGTACTGAAAACAGACACGGAGACAGGAAAGCCGCAAGGAGTGACGGTTCGGAACTCAGGCGGGGATTCAAGAAGGCCTTCTAATAACTCCGGTAGAAACTCCGGCGAATCCTCCGACGGCGGAAATGAATCGCGGGGGATTCCGAAAGTGTCGGAGGAATTGAAGGAAGCATTGGCGGCGTTTCAACAAACATTCGTGGTTTCGGATGCAATGAAAGCAGATTATCCGATAATGTATGCAAGTGCTGGATTCTTTAACATGACTGGTTATACATCCAAGGAAGTCATTGGAAGGAACTGTCGGTTTTTACAGGGCGCCGATACGGACCCAGAGGACGTGGCAAAGATAAGGGAAGCGTTGGAAGCAGGGACCAGTTACTGTGGAAGGTTACTAAATTACAAAAAAGATGGGACACCTTTTTGGAACCTTCTCACTATTTCTCCCATTAAGGACGACCATGGCAATGTCCTCAAATTTATTGGAATGTTAGTGGAAGTTAGCAAGCATACAGAAGGGTCCAAAGAGAAGATGCTACGTCCCAATGGTTTACCTGAATCCTTGATTAGATATGATGCCCGTCAGAAAGAGAAGGCTGCAACTTCAGTATCAGAGTTAGTCGAGGCCGTGAAGCGCCCCCGAGCACTCAGTGAATCAGGAAATCTTCCAGTGATCCGAAAATCGGGAGGAGCTAAAGAAGAAAGAGGAGAAGAAGAAGAAGAGAAAGCAGAAAATTTGTTAAGGAGAAACTCTGAGAGTGTAGCTTCATTTAGAAGAAAATCATCACAAGGAGGAATTAGAAGTCCGATGCAGCGAATTAGTGAGCTACCTGATAAGAAACAGAAAAACTCTCATCGCCGCTCTTTCATGGGGTTCATCAGGAAAAGTGAGTCCAACGATGAAAGCATTGTCGATGAGTTTGTTGACGACGTGAGCTCTGAGAGTGAGGACGATGAGAGGCCTGATAGCTTTGAATTTGATGAAAAAGAAAAGCAGAGGGAAAAGAGAAAGGGTCTTGATCTTGCTACCACACTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCGGATAATCCCATAATCTTTGCATCTGATAGCTTCTTAGAGCTTACAGAATATAGTCGCGAAGAAATCTTGGGAAGAAATTGCAGGTTTCTGCAAGGACCTGAAACTGATCCTGCAACTGTAAGAAAAATTAGAGAGGCAATTGACAACCAGACAGAAGTTACTGTGCAACTCATAAATTATACAAAGACCGGCAAAAAGTTTTGGAACCTGTTTCATTTGCAGCCTATGCGTGATCAGAAGGGAGAAGTACAGTATTTTATCGGTGTTCAACTTGATGGTAGTCAACATGTAGAGCCTCTTCAAAACTGCATCAAAGAAGATACTGCAAAGGAGGGAGAACAATTGGTGAAAAAAACTGCAGAAAATGTTGATGAGGCAGTGAGAGAACTTCCGGACGCTAATATGAAACCGGACGATTTATGGATGAATCATTCGAAAGTAGTTCATGCCAAACCTCATAGGAGGGAAGAGGCTGCTTGGAAAGCTATCCATAAGATCTTAGAGAGTGGAGAACAAATAGGCTTAAAGCATTTCAGGCCAGTGAAGCCTTTGGGGTCAGGAGATACTGGAAGTGTGCATTTGGTGGAGCTATCTGGAACTGGTGAATATTTTGCCATGAAGGCTATGGATAAGGGGGTTATGCTCAATCGTAACAAGGTGCATAGAGCTTGTACAGAGAGGGAAATCCTTGACATGTTGGACCACCCTTTTCTACCTGCATTATATGCTTCCTTTCAGACCAAAACACATGTTTGTTTGATAACTGATTATTGTCCGGGTGGAGAACTCTTCATGGTTCTTGATCAACAGCCAAAAAAGGTTCTCAAGGAAGATGCTGCGAGATTTTATGCTGCTGAGGTAGTGATTGCATTGGAGTACCTTCATTGCCAAGGGATAATATATAGAGATTTGAAGCCAGAGAATGTTTTAATCCAGAGCAATGGACATGTTTCTCTAACAGATTTTGATTTGTCATGTTTAACATCTTGCAAGCCACAGCTTCTACTTCCTGCTACAAATGAAAACAAGAAGAAGAAGAATAAGAAACAAAAAGGTCAAGAGCTTCCAATGTTTATGGCTGAACCAATGAGAGCATCAAATTCTTTTGTTGGCACAGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGCCATACCAGTGCTGTTGATTGGTGGGCTCTTGGTATTCTTCTATATGAAATGCTCTATGGATATACACCATTCAGGGGAAAGACAAGGCAAAAAACATTTGCAAATATTCTTCACAAGGATCTTAAATTTCCCAAAAGCAAACCGGCAAGTCTCCATGCAAAACAGTTAATATACTGGTTATTGCACAGAGATCCCAAAAACAGATTGGGTTCAAAGGAAGGAGCAAATCAAATTAAGTCTCATCCATTTTTCAAGGGCCTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAGCTTGATGCTCCTCTCAAATCGGCAACTAAAGATGAAAGGGAAGCCAATGTAGACCCTAATCTAGAGGATCTACTAACAAATGTTTTCTGA 2901 0.434 MKPSFPRDPRGSLEVFNPSTSLSHSDEIATSLVTKPKPLWKTWKDPEPPCSTSSDEITTTITAANTTSWMALKDNSIPEGESGKAAQRAAEWGLVLKTDTETGKPQGVTVRNSGGDSRRPSNNSGRNSGESSDGGNESRGIPKVSEELKEALAAFQQTFVVSDAMKADYPIMYASAGFFNMTGYTSKEVIGRNCRFLQGADTDPEDVAKIREALEAGTSYCGRLLNYKKDGTPFWNLLTISPIKDDHGNVLKFIGMLVEVSKHTEGSKEKMLRPNGLPESLIRYDARQKEKAATSVSELVEAVKRPRALSESGNLPVIRKSGGAKEERGEEEEEKAENLLRRNSESVASFRRKSSQGGIRSPMQRISELPDKKQKNSHRRSFMGFIRKSESNDESIVDEFVDDVSSESEDDERPDSFEFDEKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQTEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLQNCIKEDTAKEGEQLVKKTAENVDEAVRELPDANMKPDDLWMNHSKVVHAKPHRREEAAWKAIHKILESGEQIGLKHFRPVKPLGSGDTGSVHLVELSGTGEYFAMKAMDKGVMLNRNKVHRACTEREILDMLDHPFLPALYASFQTKTHVCLITDYCPGGELFMVLDQQPKKVLKEDAARFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSCKPQLLLPATNENKKKKNKKQKGQELPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILLYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPASLHAKQLIYWLLHRDPKNRLGSKEGANQIKSHPFFKGLNWALVRCMKPPELDAPLKSATKDEREANVDPNLEDLLTNVF* 967
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1961 966 SUPERFAMILY Protein kinase-like (PK-like) 616 946 IPR011009 -
Lan6g1961 966 Gene3D PAS domain 158 312 - -
Lan6g1961 966 CDD PAS 445 545 IPR000014 -
Lan6g1961 966 PANTHER PHOTOTROPIN-1 96 966 - -
Lan6g1961 966 Coils Coil 562 582 - -
Lan6g1961 966 Gene3D Phosphorylase Kinase; domain 1 630 943 - -
Lan6g1961 966 SUPERFAMILY PYP-like sensor domain (PAS domain) 167 257 IPR035965 -
Lan6g1961 966 Pfam Protein kinase domain 634 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1961 966 CDD STKc_phototropin_like 629 941 - -
Lan6g1961 966 Gene3D Transferase(Phosphotransferase) domain 1 715 941 - -
Lan6g1961 966 MobiDBLite consensus disorder prediction 400 430 - -
Lan6g1961 966 ProSiteProfiles PAC domain profile. 504 558 IPR000700 -
Lan6g1961 966 SMART serkin_6 631 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1961 966 MobiDBLite consensus disorder prediction 342 362 - -
Lan6g1961 966 ProSitePatterns Serine/Threonine protein kinases active-site signature. 752 764 IPR008271 GO:0004672|GO:0006468
Lan6g1961 966 MobiDBLite consensus disorder prediction 102 135 - -
Lan6g1961 966 MobiDBLite consensus disorder prediction 96 141 - -
Lan6g1961 966 Pfam PAS domain 167 261 IPR000014 -
Lan6g1961 966 Pfam PAS domain 453 545 IPR000014 -
Lan6g1961 966 SUPERFAMILY PYP-like sensor domain (PAS domain) 446 545 IPR035965 -
Lan6g1961 966 Gene3D PAS domain 419 583 - -
Lan6g1961 966 ProSiteProfiles PAC domain profile. 218 272 IPR000700 -
Lan6g1961 966 PANTHER FLIPPASE KINASE 1-RELATED 96 966 - -
Lan6g1961 966 MobiDBLite consensus disorder prediction 321 341 - -
Lan6g1961 966 SMART pac_2 221 263 IPR001610 -
Lan6g1961 966 SMART pac_2 507 549 IPR001610 -
Lan6g1961 966 MobiDBLite consensus disorder prediction 313 379 - -
Lan6g1961 966 TIGRFAM sensory_box: PAS domain S-box protein 170 265 IPR000014 -
Lan6g1961 966 TIGRFAM sensory_box: PAS domain S-box protein 455 545 IPR000014 -
Lan6g1961 966 ProSitePatterns Protein kinases ATP-binding region signature. 637 660 IPR017441 GO:0005524
Lan6g1961 966 MobiDBLite consensus disorder prediction 1 24 - -
Lan6g1961 966 SMART pas_2 432 501 IPR000014 -
Lan6g1961 966 SMART pas_2 146 215 IPR000014 -
Lan6g1961 966 MobiDBLite consensus disorder prediction 400 416 - -
Lan6g1961 966 ProSiteProfiles PAS repeat profile. 144 215 IPR000014 -
Lan6g1961 966 ProSiteProfiles PAS repeat profile. 430 503 IPR000014 -
Lan6g1961 966 ProSiteProfiles Protein kinase domain profile. 631 922 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1961 966 CDD PAS 171 260 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1961 Lan-Chr6 30540597 30554327 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1961 4 966 AGC Kinase Gene Family AT3G45780 70.219 0.0 1364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lan6g1961 Pkinase 8.5e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1961 K20715 - gmx:100817565 1480.31