Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1960 ATGGGTTGCTTTGGTTGCGCGGGAAAATCTAGCAAAAAATCCGATACCAACAATCCCATTTTTCCGGATAAGGTCAAAGTTGATTTGAATGAGAATGGTAAAAATGAAGATCAAAATTCTAAGGATAATCAACTCTCTCTGGATGCAAAGATTTTGGATCCAAAAAAAGATTCTATCAATGCAAAGACATTTACCTTTTATGAGCTTGCAGCTGCAACAGGAAATTTTCGGTCAGATTGCTTTCTAGGTGAAGGAGGGTTTGGCAAGGTTTATAAGGGAAACTTGGAGAAAATTAACCAGGTCGTAGCTATAAAGCAACTTGACCCTCACGGGACACAAGGAGTTCGCGAATTTGTTGTTGAAGTGATAACCCTGAGTTCGGCAGACCATCCTAATCTAGTCAAGTTGAATGGATTTTGTGCTCAGGGAGAGCAGAGGCTATTGGTTTATGAGTACATGCCATTGGGATCTTTGGAGAACCATTTGCATGATCTTCAACCGGGACAAAAACCAATTGATTGGTATACAAGAATGAAAATTGCAGCTGGTGCAGCTAGGGGTTTGGAATATTTGCATGATAAAATGACACCTCCTGTCATATACCGTGACCTGAAATGCTCAAACATTTTGTTAGGAGAGGGATATCATGCCAAGTTATCCGACTTTGGTTTGGCTAAAGTAGGTCCAAGTGGTGATAACACTCATGTTTCAACCAGGGTTATGGGTACATATGGGTATTGTGCCCCAGATTATGCGATGACGGGCCAGTTAACGTTCAAGTCTGATATTTACAGCTTCGGGGTCGTTCTTTTGGAACTCATCACGGGTAGGAAAGCTATAGACCATACAAAAGCTGGAAAAAAACTAAATCTAGTTTCATGGGCGAGGCCCTTATTTCGAGACAGGAAAAGATTCACGCAGATGATTGATCCACTGCTTGAAGGTGAATTTCCAGTTAGAGGGTTATATCAAGCTCTTGCAATTGCTGCTATGTGTGTTCAAGAGCAGCCTAATATGCGTCCTGCTATAGCCGATGTGGTTACAGCTCTAAACTACCTTGCATATCAGAAACACGAAGATCAGTTTCATTCAGCGCGAACCTCTGGAGACAGCTTATCCTCTCCGAGAACGAAAAGGGGTGGTCATAGACGTTTGGCTAGTAGTGATTCTGAGACGGATAAATCGGGTGAATAG 1194 0.4213 MGCFGCAGKSSKKSDTNNPIFPDKVKVDLNENGKNEDQNSKDNQLSLDAKILDPKKDSINAKTFTFYELAAATGNFRSDCFLGEGGFGKVYKGNLEKINQVVAIKQLDPHGTQGVREFVVEVITLSSADHPNLVKLNGFCAQGEQRLLVYEYMPLGSLENHLHDLQPGQKPIDWYTRMKIAAGAARGLEYLHDKMTPPVIYRDLKCSNILLGEGYHAKLSDFGLAKVGPSGDNTHVSTRVMGTYGYCAPDYAMTGQLTFKSDIYSFGVVLLELITGRKAIDHTKAGKKLNLVSWARPLFRDRKRFTQMIDPLLEGEFPVRGLYQALAIAAMCVQEQPNMRPAIADVVTALNYLAYQKHEDQFHSARTSGDSLSSPRTKRGGHRRLASSDSETDKSGE* 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1960 397 SMART serkin_6 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1960 397 Pfam Protein tyrosine and serine/threonine kinase 81 348 IPR001245 GO:0004672|GO:0006468
Lan6g1960 397 MobiDBLite consensus disorder prediction 1 22 - -
Lan6g1960 397 SUPERFAMILY Protein kinase-like (PK-like) 62 362 IPR011009 -
Lan6g1960 397 MobiDBLite consensus disorder prediction 363 397 - -
Lan6g1960 397 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL5-RELATED 1 378 - -
Lan6g1960 397 Gene3D Phosphorylase Kinase; domain 1 48 152 - -
Lan6g1960 397 ProSitePatterns Protein kinases ATP-binding region signature. 82 105 IPR017441 GO:0005524
Lan6g1960 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lan6g1960 397 ProSiteProfiles Protein kinase domain profile. 76 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1960 397 MobiDBLite consensus disorder prediction 382 397 - -
Lan6g1960 397 CDD STKc_IRAK 82 351 - -
Lan6g1960 397 Gene3D Transferase(Phosphotransferase) domain 1 153 373 - -
Lan6g1960 397 PANTHER OS07G0668900 PROTEIN 1 378 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1960 Lan-Chr6 30532900 30536665 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1960 1 353 Glycoside Hydrolase AT3G07070 55.946 4.00e-143 411
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lan6g1960 PK_Tyr_Ser-Thr 2.3e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1960 - - gmx:100794680 620.542
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1960 6 30532900 30536665 Lan3g0071 3 469551 472522 LSH
Lan6g1960 6 30532900 30536665 Lan8g1696 8 23831992 23835766 PCT
Lan6g1960 6 30532900 30536665 Lan13g0357 13 2349021 2352631 PCT
Lan8g1696 8 23831992 23835766 Lan6g1960 6 30532900 30536665 PCT
Lan13g0357 13 2349021 2352631 Lan6g1960 6 30532900 30536665 PCT