Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1953 ATGGATTTCAATGACACAAACACCCCTAATTCCTCTCCATTTTCTCACTCTTTTCCTACCATTTACACATCTTTCCCTCCACAACCTATAGCTCCTACTCAAGTAGTGATGAACCCTTGTGCTGCTTGCAAGATTTTGAGGCGAAGATGTGCTGAAAAATGTGTGTTAGCACCTTATTTTCCTCCCAATGAACCTGCCAAGTTTACCTTTGCACACAAAGTCTTTGGAGCTAGCAACATCATCAAGTTCTTACAGGAACTTCCTGAGTCACAAAGAGCTGATGCAGTGACAAGCATGGTTTATGAAGCTGGTGCAAGAATAAGAGATCCAATATATGGTTGTGCAGGAGTAATATGCAACCTCCAAAAACAAATCAACCAGCTTCAAACACAATTAGCAAAGACACAAGCTGAGGTTGTAAACATGCAATTGCAACAAGCCAATCTTGTGGCTCTAATTTGCATGCAAATGGCACCACAACAATCATTGGACAATTTCATTTCAAGTACTCAATACAACAATATTGGATATCAAAACAATCTTAACTTCTATGAGGAGAATATTAGCCTAAATTCACTATTAGAGCCTCTTTGGACATGA 600 0.3917 MDFNDTNTPNSSPFSHSFPTIYTSFPPQPIAPTQVVMNPCAACKILRRRCAEKCVLAPYFPPNEPAKFTFAHKVFGASNIIKFLQELPESQRADAVTSMVYEAGARIRDPIYGCAGVICNLQKQINQLQTQLAKTQAEVVNMQLQQANLVALICMQMAPQQSLDNFISSTQYNNIGYQNNLNFYEENISLNSLLEPLWT* 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1953 199 ProSiteProfiles LOB domain profile. 38 139 IPR004883 -
Lan6g1953 199 Pfam Lateral organ boundaries (LOB) domain 39 136 IPR004883 -
Lan6g1953 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 27 192 - -
Lan6g1953 199 Coils Coil 118 145 - -
Lan6g1953 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 27 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1953 Lan-Chr6 30474125 30475630 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1953 34 199 AS2 family AT1G07900 62.353 9.43e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Lan6g1953 LOB 1.5e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1953 - - gmx:100819336 287.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1953 6 30474125 30475630 Lan10g0123 10 761942 763730 LSH
Lan6g1953 6 30474125 30475630 Lan7g0278 7 1783379 1785118 PCT
Lan6g1953 6 30474125 30475630 Lan13g0365 13 2443454 2445066 PCT
Lan7g0278 7 1783379 1785118 Lan6g1953 6 30474125 30475630 PCT
Lan13g0365 13 2443454 2445066 Lan6g1953 6 30474125 30475630 PCT