Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1951 ATGGATTTGGTATCCAGTTGCAAGGAAAAGTTGACATATTTTCGTATAAAAGAGCTCAAAGATGTGCTCACTCAGTTAGGACTTTCAAAGCAGGGAAAGAAGCAGGATCTTGTTGACAGGATATTATCTATTCTCTCTGATGAACAAGTTTCCAGAATGTGGGCTAAGAAAAATGCTGTTGGAAAAGAACAAGTGGCAAAATTAGTGGATGACACATATAGAAAATTGCAGGGATCCGGGGCCACTGATCTAGCATCGAAGGGACAAGGTGCCTCAGATAGTAGTAATGTGAATGTGAATGTTAAAGCTGAAATTGATGATTCCTTTCAATCAGATACAAAGATTCGCTGTCTCTGTGGAAGTTCATTGGAAACAGAGCCATTGATAAAGTGTGAAGATACAAGATGCCATGTGTGGCAGCATATCAACTGTGTTATTATTCCAGAGAAACCCATGGAAGGAACCCCTCCAGTTCCTGATAAATTTTATTGCGAGACCTGTCGACTCAGTCGTGCAGATCCGTTTTGGGTTTCAATGGCACACCCTTTGCTTCCGGTGAGGTTGACTACAACAAGCATTCCAACTGATGGAACAAACCCAGTTCAGAGCGTGGAGAAAACATTTCAACTTACGAGAGCTGATAAGGACTTGATAACAAGACCAGAATTTGATGTTCAGGCTTGGTGTATGCTCTTGAACGACAAAGTTTCATTCAGAATGCAATGGCCACAATATACAGACCTTCAAATCAATGGTTTTTCTGTACGTGCAATTAACAGACCTGGTTCACAATTGCTTGGAGCTAATGGTCGTGATGATGGCCCAATTATCACGCCATATACAAAAGACGGAGTTAATAAAATTTGCTTAACAGGGTGTGATGTTCGCATTTTCTGTTTAGGGGTCCGTATTGTCAGAAGGCGAAGCATGCTGCAGATCTTAAACATGATTCCGAAGGAGTCTGAAGGTGAGCGTTTTGAAGATGCTCTTGCACGCGTCGTTTCTTGTGTTGGGGGTGGAAATGCAAGTGATAATGCTGATAGTGACAGTGATTTGGAAGTGGTTTCAGATACTTTCAGCATCAACCTTCGTTGTCCAATGAGTGGATCAAGAATGAAGATTGCTGGAAGATTCAAACCTTGCGTTCACATGGGTTGTTTCGATCTTGAAATTTTTGTGGAAATGAATCAACGTTCAAGGAAGTGGCAATGCCCCATATGTCTTAAGAATTATGCATTGGAGAATATCATTATTGACCCTTATTTCAATCGCATCACTAAAATGATGAGAAATTGTGGAGAAGAAGTTACTGAGGTTGAGGTGAAGCCTGATGGTTCTTGGCGTGTCAAGGCTAAGGGTGAAATTGAACGCATGGAGTTGGGGAATCTTTCTCAATGGCGCTGTCCTGATGGATCCCTCTCTGTTTCTACTGGTGGTGAAGTCAATAGTGTAGAAACTTCAAAGCTCAAACAGGGTGGGGTTTCAGACAGTCCTGCTGGTTTAAGACTTGGCATCAGGAAGAATTGTAATGGAGTTTGGGAAGTCAATAAACCCGACGGCACAAATACCTCTTCTGGTAATAGATTGATTAAGGATTTTGGAAATCACGAACATGTGGTTATTCCAATGAGTAGCAGTTCCACTGGAAGTGGCAGGGATGGTGATGATCGTAGCGTAAATCAAGGTGGTGCTGGGCATATTGATTATTCAACTGCCAATGGGATTGAGATGGATTCTCTGTATCACAATAATGTTGATTCAGCTCATGGGTATGCTGCACATAACACTTCGGCTCCAGTGGGTGCTGCAGAAGTTATTATTCTGAGTGACTCAGATGAAGACAATGATATATTGGCCTCTCCTACACTTGGGTACGAAAATAATCAAACTGGTGATGCAGGTGTTGTTTACTCAGTGCCATCACATGAAGTTATTGATTCATATGCAGAAGATCAGCAGCTTGGTGGAAATCCATGCTCGGGACTTTATAATAATCCCGAAGAAGATGATTTTGGGTTTTCATCCTCCCTCTGGTCATTACCTTCTGGAACCCAGGCAGGCCCTGGATTTCAGTTATTTAGCTCTGATGTGGATGTGTCAGATGCATTGGTCCATTTGCAGCACGGTGATATTAATTGCTCTTCATCACTGAATGGTTATACATTGGCTCCAGATACTGCTGCTTTGGGCTCTAGTACTCTCATACCAGATTCTTCTGCAAGACGTTCTGATGCTGATTTAAATGGTGGTTTGGTTGACAATCCAGTGCCATTTGCTGGAGAAGATCCCTCGCTGCAGATTTTTCTTCCAACAAGACCAGCAGATTCATCTGTGCAGGATGAATTGAGAGATCAGGAAGATGTATCAAATGGTATCTGCACTGAAAATTGGATCTCTCTTAGCCTTGGAGGTGGTGCTAGTTGCAGCAATGGTGATGCATCAACTACAAATGGATTGAATTCCAGACAACAAATTACATCTAAAGAAGGCCCTTCTAATACTTCAACCGATACTGCTTCTTTGCTTCTTGGCATGAATGATGTTAGATCTGACAAAGAAAGCAGACAAAGATCAGATAGCCCTTTCTCATTTCCTCGCCAAAAACGTTCAGTAAGGCCCCGCCTGTATCTTTCCATTGATTCAGATTCAGAGTAG 2655 0.4215 MDLVSSCKEKLTYFRIKELKDVLTQLGLSKQGKKQDLVDRILSILSDEQVSRMWAKKNAVGKEQVAKLVDDTYRKLQGSGATDLASKGQGASDSSNVNVNVKAEIDDSFQSDTKIRCLCGSSLETEPLIKCEDTRCHVWQHINCVIIPEKPMEGTPPVPDKFYCETCRLSRADPFWVSMAHPLLPVRLTTTSIPTDGTNPVQSVEKTFQLTRADKDLITRPEFDVQAWCMLLNDKVSFRMQWPQYTDLQINGFSVRAINRPGSQLLGANGRDDGPIITPYTKDGVNKICLTGCDVRIFCLGVRIVRRRSMLQILNMIPKESEGERFEDALARVVSCVGGGNASDNADSDSDLEVVSDTFSINLRCPMSGSRMKIAGRFKPCVHMGCFDLEIFVEMNQRSRKWQCPICLKNYALENIIIDPYFNRITKMMRNCGEEVTEVEVKPDGSWRVKAKGEIERMELGNLSQWRCPDGSLSVSTGGEVNSVETSKLKQGGVSDSPAGLRLGIRKNCNGVWEVNKPDGTNTSSGNRLIKDFGNHEHVVIPMSSSSTGSGRDGDDRSVNQGGAGHIDYSTANGIEMDSLYHNNVDSAHGYAAHNTSAPVGAAEVIILSDSDEDNDILASPTLGYENNQTGDAGVVYSVPSHEVIDSYAEDQQLGGNPCSGLYNNPEEDDFGFSSSLWSLPSGTQAGPGFQLFSSDVDVSDALVHLQHGDINCSSSLNGYTLAPDTAALGSSTLIPDSSARRSDADLNGGLVDNPVPFAGEDPSLQIFLPTRPADSSVQDELRDQEDVSNGICTENWISLSLGGGASCSNGDASTTNGLNSRQQITSKEGPSNTSTDTASLLLGMNDVRSDKESRQRSDSPFSFPRQKRSVRPRLYLSIDSDSE* 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1951 884 ProSitePatterns Zinc finger PHD-type signature. 117 167 IPR019786 -
Lan6g1951 884 MobiDBLite consensus disorder prediction 809 843 - -
Lan6g1951 884 SUPERFAMILY FYVE/PHD zinc finger 109 171 IPR011011 -
Lan6g1951 884 ProSiteProfiles Zinc finger SP-RING-type profile. 348 431 IPR004181 GO:0008270
Lan6g1951 884 SUPERFAMILY SAP domain 1 64 IPR036361 -
Lan6g1951 884 SMART sap_9 11 45 IPR003034 -
Lan6g1951 884 CDD PHD_Bye1p_SIZ1_like 116 167 - -
Lan6g1951 884 Pfam MIZ/SP-RING zinc finger 361 409 IPR004181 GO:0008270
Lan6g1951 884 PANTHER E3 SUMO-PROTEIN LIGASE SIZ1 9 815 - -
Lan6g1951 884 PANTHER ZINC FINGER MIZ DOMAIN-CONTAINING PROTEIN 9 815 - -
Lan6g1951 884 Gene3D SAP domain 1 61 IPR036361 -
Lan6g1951 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 449 IPR013083 -
Lan6g1951 884 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 173 IPR013083 -
Lan6g1951 884 Pfam SAP domain 14 42 IPR003034 -
Lan6g1951 884 MobiDBLite consensus disorder prediction 543 564 - -
Lan6g1951 884 MobiDBLite consensus disorder prediction 809 884 - -
Lan6g1951 884 ProSiteProfiles SAP motif profile. 11 45 IPR003034 -
Lan6g1951 884 SMART PHD_3 116 168 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1951 Lan-Chr6 30453127 30465397 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan6g1951 zf-MIZ 4e-19 CL0229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1951 - - gmx:100793735 1400.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1951 6 30453127 30465397 Lan3g0076 3 514417 524418 LSH
Lan6g1951 6 30453127 30465397 Lan7g0285 7 1828455 1838325 PCT
Lan6g1951 6 30453127 30465397 Lan8g1681 8 23720187 23733356 PCT
Lan7g0285 7 1828455 1838325 Lan6g1951 6 30453127 30465397 PCT
Lan8g1681 8 23720187 23733356 Lan6g1951 6 30453127 30465397 PCT