Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1942 ATGAGTTCTGAGCAAACACATGTTGCAGCTTCTTCTTGCAACAGAACAATTTCTCTTCCCTTTCACAAGTTCGATGATCCGATGGGAGTAGCCGAAGAAACATCGCATGGGAATAGGCAGAAGAATATTGTGCTGGAAGTACCCTCAAGAACAACATCATTAGAGTCTGGTCAGGATTTTGTTGGAATAAAGATGCCAATGACACCAAGTCCAGGTCCTGCTACTAAGAGAGTGAACTTTCTTGCGACTTCTCGATCCGTCGATGCTCCAAATAGTAATTCTGCTCCGGGGCCTTCAGCACCAAGAGGCAAACCATCCATAAGAAACATGTTACCAAAATTGACCTTCAGGCAAAGGACATCATCAGATATTGAGAAGGCTAATCTTACTACTGCAACTCCAGATAGTTACTTTTCCGGAATTCAAGAAAAATCTCCAATCCCAAGATCAGTGTCCATGGCTAAGATGTTTACTCCGAAGATTAGGAGAACATCGTCATTACCCGTAGAAGAATTTGGACATGCAAACACAGAATTTGCTCCTGGTGGATGTTTTGATGGTTCTCCATATATAAGGGAGAGCCAGGGGACAATAGCTCGGTCTAATTCAGTGCCTGTCAATAGCAAAGAACAAAGCATAAGGAGGATGGATTCACATTTCCGCATTATTTCCACCCCTCAAGTAAAGAAAGGGAATGAATGGTTGACCAGTTCCACAACACAGAATACTGAAAATGGTGACGCTGATGGTGAAGATATAGGCGCAGAGGAAGCTGTGTGTAGAATATGTATGGTTGAGCTATGTGAAGGAGGTGAGACGTTCAAGATGGAATGCAGCTGCAAAGGTGAACTTGCCTTGGCTCACCAAGAATGTGCTATCAAATGGTTTAGTATCAAAGGTAACAAGACCTGTGATGTGTGCAAGGAAGAAGTTCAGAATCTCTCGGTCACTCTCTTACGTGTCCAAAATGCTCAACCTCAGAGTACTGGAGCAACGCCTCACCGTAATGAACTCAGGGTTTGGCAGGAACTGCCAGTGCTTGTCCTTGTCAGCATGCTTGCATATTTCTGTTTTCTTGAGGAACTACTGGTTAAACAAATGAAATCCCGGGCGATTTACTTGTCTCTTCCATTTTCCTGTGTATTGGGTCTACTTTCTGCCATGACATCATCAACCATGGTGAAGAGCAGGTTCACCTGGATTTATGCTTCTATCCAATTTACTTTGGTGGTTCTCTTCGGACATATATTTTACCCCTTGGTTGGTAAGCAAGCAATTCTGTCAATCCTTCTAGCAACATTTGCCGGGTTTGGTGTGGTGATGAGTGGAAGTTCAATTGTAGCAGAGATTTTTAAATGGAGAAGAACATGGCAAGCTTTAACAATGCAGCAAAATGGTTCACAAGGGGTGACACATTCAGAAGGACAATACCCTCAAACTATAAATGCTGCATCACAAACAGGCCCTTCGAACCGCACTCAAATTATGGTTTAG 1494 0.4317 MSSEQTHVAASSCNRTISLPFHKFDDPMGVAEETSHGNRQKNIVLEVPSRTTSLESGQDFVGIKMPMTPSPGPATKRVNFLATSRSVDAPNSNSAPGPSAPRGKPSIRNMLPKLTFRQRTSSDIEKANLTTATPDSYFSGIQEKSPIPRSVSMAKMFTPKIRRTSSLPVEEFGHANTEFAPGGCFDGSPYIRESQGTIARSNSVPVNSKEQSIRRMDSHFRIISTPQVKKGNEWLTSSTTQNTENGDADGEDIGAEEAVCRICMVELCEGGETFKMECSCKGELALAHQECAIKWFSIKGNKTCDVCKEEVQNLSVTLLRVQNAQPQSTGATPHRNELRVWQELPVLVLVSMLAYFCFLEELLVKQMKSRAIYLSLPFSCVLGLLSAMTSSTMVKSRFTWIYASIQFTLVVLFGHIFYPLVGKQAILSILLATFAGFGVVMSGSSIVAEIFKWRRTWQALTMQQNGSQGVTHSEGQYPQTINAASQTGPSNRTQIMV* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1942 497 SUPERFAMILY RING/U-box 256 311 - -
Lan6g1942 497 SMART ringv_2 259 308 IPR011016 GO:0008270
Lan6g1942 497 CDD RING_CH-C4HC3_MARCH 260 308 - -
Lan6g1942 497 Pfam RING-variant domain 260 307 IPR011016 GO:0008270
Lan6g1942 497 ProSiteProfiles Zinc finger RING-CH-type profile. 252 314 IPR011016 GO:0008270
Lan6g1942 497 PANTHER OS02G0165000 PROTEIN 29 476 - -
Lan6g1942 497 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 246 317 IPR013083 -
Lan6g1942 497 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 29 476 - -
Lan6g1942 497 MobiDBLite consensus disorder prediction 86 109 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1942 Lan-Chr6 30385047 30389471 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1942 257 343 C3H Transcription Factor Family AT2G37950 37.500 8.16e-13 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1942 - - gmx:100815566 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1942 6 30385047 30389471 Lan7g0295 7 1896649 1900752 PCT
Lan6g1942 6 30385047 30389471 Lan8g1673 8 23663830 23668456 PCT
Lan7g0295 7 1896649 1900752 Lan6g1942 6 30385047 30389471 PCT
Lan8g1673 8 23663830 23668456 Lan6g1942 6 30385047 30389471 PCT