Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1939 ATGATGACAATGAGATTGTTATGGAGATTAAGGTTGCCACTACTCATATTGATTCAACTTTTATACCCCAACAAATCAACCTACAAATTATATGCTGAGGCTTTGTTCACTATCAAGAGTTCACAACAATTTGGATGCAACATTGTGAATTATCCATGTCAAATACAATGGCCTTGTCTTGACTGCAATAAAATAAAAGATCCAGGTGTAATAACAGGAAAAATAGATGGGAATAATGACATTCCAACACTTACACCTCTTCAAGATTCTCAAGCTAAGAGACCAAAAGGAATAAAGGGTGCTGTTATAGTTGGTGGCATTGTTGCTTCCTTAATTGTGGTTACAATTCTAGTGTTTGTCTATGTCTGCTTGATGAGAATCAAAAGACTTATAAGACAAACATCTGAGTCTGCTTCTTCTATGCCATCTCCATCTGTTGAGATGGGAAGATGCAACAACTCAGAGTATGTAAGTGCTTTTACTTCACATTATTCACAGAAGACAAGGCATATAACCATTTTGGAACTTGAACAAGCTACAACAAATTTCGGTCAGAGTAATATTATAGGTGAAGGTGGATTTGGTTTTGTTTACAAGGGTTTGCTTGAAGATGGATCTATTGTAGCCATAAAAAGGCGCCTATTTGCTTTGACACCAGATTTCGTCCGAGAGGTTAAGCAGATAACTCACATCCACCACATACATCTTGTGAAGCTTATAGGCTATTATGAAGATAGGTTCCAACAATTGCTTGTGTATGAATATCTCCCTAATGGCAATGTAGGGAATCACCTATATGACAATGAAGGTTTACCACTAGGAAGGTTAGACTTGTGGAGAAGGTTATCCATTGCTTTAGGAGCTGCCAAAGGACTTGAACATCTTCATAGTTTGGTCCCTCCTTTGGTTCACACAAATTTTAGAACTAGAAATGTTCTTTTAGATGAAAATTATAGTGCCAAGGTTTCTGATTATGGATTCTGCAAAATGCAAAGAAAAGCTGACCAACCTGGCTCATCTTCAAACATAGACTGTTTTCTTGATCCAGAGTTGAGCTTATCACAAAACTATTCAGAGCATAGTGATGTATACAGTTTTGGAGTATTCTTACTAGAATTGATTAGTGGATGTGAAGCACATAACAAAAACATGTCAAACACATATGAAACTCTAGTATTTCAGGCAAAACATAACAATGATGTGGACAATTTTGTTGACATGAGACTAGGAGAGCATGAAAAGTGTAATAATGGTGCTACAAATATGATGAAGTTGGCATTGTTATGTGTGGATTTGAGTTATAGAAGACCATCAATGAGGCAAATTGTGCAAGAGTTGGAGCATATTCAAAGAGAAATTGCTCCTTTCTATTCTCAATTCAGTGAGGAAATTGGTGTGGTCACACTAGGGAGTGAGCTATTTCAATAA 1428 0.3655 MMTMRLLWRLRLPLLILIQLLYPNKSTYKLYAEALFTIKSSQQFGCNIVNYPCQIQWPCLDCNKIKDPGVITGKIDGNNDIPTLTPLQDSQAKRPKGIKGAVIVGGIVASLIVVTILVFVYVCLMRIKRLIRQTSESASSMPSPSVEMGRCNNSEYVSAFTSHYSQKTRHITILELEQATTNFGQSNIIGEGGFGFVYKGLLEDGSIVAIKRRLFALTPDFVREVKQITHIHHIHLVKLIGYYEDRFQQLLVYEYLPNGNVGNHLYDNEGLPLGRLDLWRRLSIALGAAKGLEHLHSLVPPLVHTNFRTRNVLLDENYSAKVSDYGFCKMQRKADQPGSSSNIDCFLDPELSLSQNYSEHSDVYSFGVFLLELISGCEAHNKNMSNTYETLVFQAKHNNDVDNFVDMRLGEHEKCNNGATNMMKLALLCVDLSYRRPSMRQIVQELEHIQREIAPFYSQFSEEIGVVTLGSELFQ* 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1939 475 Pfam Protein tyrosine and serine/threonine kinase 187 446 IPR001245 GO:0004672|GO:0006468
Lan6g1939 475 ProSiteProfiles Protein kinase domain profile. 183 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan6g1939 475 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524
Lan6g1939 475 PANTHER PROTEIN KINASE APK1A, CHLOROPLASTIC-LIKE 71 473 - -
Lan6g1939 475 Gene3D Phosphorylase Kinase; domain 1 146 255 - -
Lan6g1939 475 Gene3D Transferase(Phosphotransferase) domain 1 256 463 - -
Lan6g1939 475 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 71 473 - -
Lan6g1939 475 SUPERFAMILY Protein kinase-like (PK-like) 163 455 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1939 Lan-Chr6 30365661 30370461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1939 166 449 Receptor kinase-like Gene Family AT1G79620 37.037 1.28e-50 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Lan6g1939 PK_Tyr_Ser-Thr 4.1e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1939 - - gmx:100780443 704.516