Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1936 ATGGCAATGAGTGGGACTCAGCACAGAGAAAGTAACAGCAGTGGTGGTAGCAGCATTGATAAACACCTTGATTCTGGTAAATACGTGCGCTACACGGCTGAACAAGTTGAAGCTCTTGAAAGGGTTTATATGGAGTGCCCGAAACCTAGTTCCTTGAGAAGGCAACAGTTAATCAGAGACTGCCCAATTCTCTCCAACATTGAGCCAAAGCAAATCAAAGTTTGGTTCCAGAATCGTAGGTGTCGGGAGAAGCAGAGAAAAGAGGCTTCACGTCTTCATACCGTGAATCGGAAACTAAGTGCAATGAACAAGTTGTTGATGGAGGAAAACAATCGGTTGCAGAAACAGGTGTCATTGTTGGTATGCGAGAATGGCTATATGCGGCAGCAATTGCGTATTCCATCAGCACGAGCTGCTGATGCAAGTTGTGATTCGGCGGTTACTACTCCCCAGCATTATATGAGAGACGCAAACACTCCTGCTGGATTTCTATCAATTGCAGAGGAGACTTTGACAGAGTTCCTTTCAAAGGCTACGGGAACCGCTGTTGACTGGGTCCAGATGCCCGGAATGAAGCCTGGTCCAGAGTCGGTTGGGATCTTTGCCATTTCACAAGGTTGCATTGGAGTGGCAGCTCGAGCTTGTGGTCTTGTTAGTTTAGAACCTACAAAGGTTGCGGAGATCCTAAAAGACCGTCTGTCTTGGTTTCGAGAGTGTCGGAGTCTAGAAGTTTTCACAACAGTCCCTGCTGGAAATGGAGGGACAATTGAACTTGTTTACACACAGACATATGCCCCAACCACACTGGCTCCTGCTCGGGATTTCTGGACTCTAAGATACACAACAACTTTAGAGAATGGCAGTCTTGTGGTTTGTGAGAGGTCACTGTCCGGTTCTGGTGCTGGGCCTGATGCAGCAGCTGCCGCTCAATTTGTGAGGGCTGAAGTGCTATCTAGCGGCTACTTGATTCGACCATGTGAAGGTGGAGGGTCAATCATCCACATTGTAGACCACCTAAACCTTCAGCCTTGGAGTGTGCCAGAAGTGCTGCAACCACTTTATGAATCATCAAAAGTGGTAGCTCAGAAAATGACAATTGCGGCACTTCGCTATATCAGGCAAATAGCTCAGGAAACAAGTGGTGAAGTGGTATATGGCTTGGGTAGGCAACCGGCTGTTCTGAGAACTTTCAGCCAAAGGTTGAGCAGAGGCTTCAACCATGCTGTCAATGGATTCAATGACGATGGCTGGTCTGTCGTGAACTGTGATGGTGCTGAGGATATAATTATTTCAGTTAATTCAACCAAGAATTTGAGTGGTACTTCTAATCTAGCGACACCGCTTACTTCCCTTGGAGGAATTCTCTGTGCTAAAGCTTCTATGTTACTCCAGAATGTCCCTCCAGCAGCTTTGATTCGCTTTCTGAGGGAGCATCGCTCAGAGTGGGCTGATTTTAACATTGATGCCTATTCTGCTGCTTCACTTAAATCTGGCTCCTATACATATCCTGGAACGAGGCCTACAAGTTTCACCGGAAATCAAATAATCATGCCACTTGGGCACACGATTGAACACGAAGAGATGCTTGAAGTTGTCCGGCTTGAAGGTCACTCTCTTGCTCAAGAAGATGCTTTTGTTTCTCGGGACATTCATCTCTTACAGATATGCAGTGGAATTGATGAGAATTCTGTGGGGCCTTGTTCTGAGCTAATATTTGCTCCAATTGATGAAATGTTTCCAGATGATGCTCCATTGGTGCCCTCCGGTTTCCGCATTATCCCCTTGGATTCAAAACCAGGTGATAAAAAGGATGCGACGACAGGAAATCGAACCTTGGATTTGACATCTGGTCTTGAAGTAGGCCTGGCAACAAGCCATGCTGCAGGAGATGCATCGTCATGTTATACCAATCGGTCGGTGTTGACTATAGCCTTTCAGTTTCCTTTTGACAGCAGTCTGCAGGATAATGTTGCAGGCATGGCACTTCAGTACGTCCGCAGTGTGATTTCTTCTGTGCAGAGGGTTGCCATGGCTATATCTCCATCTGGTATAGACCCGGCTGTCAGTGCAAAACTCTCCCCGGGCTCTCCTGAAGCTCTTACGCTAGCTCAGTGGATCTGTCAGAGTTATAGTTATCATTTGGGGACAGAGTTGCTGAGATCTGATACTCTTGTTGGGGACTTGGTACTGAAACATTTCTGGCATCATCAGGATGCTATTTTGTGCTGTTCTTTGAAGTCGCAGCCGATGTTCATCTTTGCAAACCAGGCTGGTCTTGATATGATGGAAACAACTCTGGTTGCTTTACAAGACATAACATTAGATAAAATATTTGATGAATCTGGACGCAAGGCATTGTTTTCGGATTTTGCTAAGATCATGCAGCAGGGGTTTGCTTATCTACCAGGTGGGATCTGCATGTCCACAATGGGAAGACATGTTTCATATGAGCAAGCCATTGCATGGAAAGTGCTTGCTGAACAAGATAATAATGTTCATTGCTTAGCTTTTTCTTTTATAAATTGGACTTTTGTATGA 2538 0.4574 MAMSGTQHRESNSSGGSSIDKHLDSGKYVRYTAEQVEALERVYMECPKPSSLRRQQLIRDCPILSNIEPKQIKVWFQNRRCREKQRKEASRLHTVNRKLSAMNKLLMEENNRLQKQVSLLVCENGYMRQQLRIPSARAADASCDSAVTTPQHYMRDANTPAGFLSIAEETLTEFLSKATGTAVDWVQMPGMKPGPESVGIFAISQGCIGVAARACGLVSLEPTKVAEILKDRLSWFRECRSLEVFTTVPAGNGGTIELVYTQTYAPTTLAPARDFWTLRYTTTLENGSLVVCERSLSGSGAGPDAAAAAQFVRAEVLSSGYLIRPCEGGGSIIHIVDHLNLQPWSVPEVLQPLYESSKVVAQKMTIAALRYIRQIAQETSGEVVYGLGRQPAVLRTFSQRLSRGFNHAVNGFNDDGWSVVNCDGAEDIIISVNSTKNLSGTSNLATPLTSLGGILCAKASMLLQNVPPAALIRFLREHRSEWADFNIDAYSAASLKSGSYTYPGTRPTSFTGNQIIMPLGHTIEHEEMLEVVRLEGHSLAQEDAFVSRDIHLLQICSGIDENSVGPCSELIFAPIDEMFPDDAPLVPSGFRIIPLDSKPGDKKDATTGNRTLDLTSGLEVGLATSHAAGDASSCYTNRSVLTIAFQFPFDSSLQDNVAGMALQYVRSVISSVQRVAMAISPSGIDPAVSAKLSPGSPEALTLAQWICQSYSYHLGTELLRSDTLVGDLVLKHFWHHQDAILCCSLKSQPMFIFANQAGLDMMETTLVALQDITLDKIFDESGRKALFSDFAKIMQQGFAYLPGGICMSTMGRHVSYEQAIAWKVLAEQDNNVHCLAFSFINWTFV* 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1936 845 ProSiteProfiles START domain profile. 156 384 IPR002913 GO:0008289
Lan6g1936 845 SUPERFAMILY Bet v1-like 165 377 - -
Lan6g1936 845 Coils Coil 96 123 - -
Lan6g1936 845 MobiDBLite consensus disorder prediction 1 20 - -
Lan6g1936 845 CDD bZIP 79 118 - -
Lan6g1936 845 CDD homeodomain 27 87 IPR001356 GO:0003677
Lan6g1936 845 Pfam START domain 166 373 IPR002913 GO:0008289
Lan6g1936 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 845 IPR044830 GO:0003700
Lan6g1936 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN REVOLUTA 1 845 - -
Lan6g1936 845 Gene3D - 20 92 - -
Lan6g1936 845 Gene3D - 202 382 IPR023393 -
Lan6g1936 845 MobiDBLite consensus disorder prediction 1 21 - -
Lan6g1936 845 CDD START_ArGLABRA2_like 160 376 - -
Lan6g1936 845 Pfam Homeodomain 27 85 IPR001356 GO:0003677
Lan6g1936 845 SUPERFAMILY Homeodomain-like 26 90 IPR009057 -
Lan6g1936 845 Pfam MEKHLA domain 701 844 IPR013978 -
Lan6g1936 845 SMART START_1 165 375 IPR002913 GO:0008289
Lan6g1936 845 ProSiteProfiles 'Homeobox' domain profile. 22 86 IPR001356 GO:0003677
Lan6g1936 845 SMART HOX_1 24 90 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1936 Lan-Chr6 30335321 30341648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1936 1 845 Homeobox Transcription Factor Family AT5G60690 79.788 0.0 1405
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan6g1936 START 3.2e-47 CL0209