LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lan6g1932	ATGGGTTTTGCTTGTTCAAGATCTGTAAGTTTTGATGATGATCCTGAACTAGTAGAAGTTCCTGCATCGAAAAACGACAACGGAATTAAGCTTAAATACCACATTGATGGCAGACAAATACCAGAGTCAAGTTCCAAAATGGCACAGAAGAAGGTGCTAAGGAAGACAAAAAAGTTGTTGAAAGCTAGAGTGTTGTCAAGGGTTTTCTCAGAGGACTATGAAAGAGTAAACAGAAGACTAATATTAGATCCTAGGGGACAAATCATAAACAGATGGAACAAGATTTTCTTAGTAGCATGTTTAGCATCATTGTTTTTGGACCCTTTGTTCTTTTATTTGCCTGTAGTTCAAGATCAAGTTTGCATTGATATTGGAATAAGTCTTGAAGTTACCCTTACAATCATAAGATCAGTGGTGGATTTATTTTACATCATCCAGATTTTCATCAAGTTTCGGACAGCTTATGTCGCGCCTTCTTCGCGGGTATTCGGGAGAGGAGAGCTTGTTATAAAATCTTATAAGATTGCAATTAGGTACCTAAAGATGGGTTTCTGGTTAGACTTCATTGCTGCACTGCCAATTCCTCAGGTGCTGATTTGGATTGTTATTCCAACACTTAGAGGTTCAACAATGAGAAACACAAAAAATGTCCTTAGATTTTTCATCATATTCCAATATCTGCCAAGGCTATTCTTGATTTTTCCACTTTCAGCACAAATTGTTAATGCAACAGGTGTTGTGACAAAAACAGCATGGGCAGGGGCTGCTTATAATCTCATGCTTTACTTGTTGGCAAGCCATATTTTAGGGGCATGCTGGTACCTTCTATCGATTGAACGCCAAGAAGCATGCTGGAGAAGAGTGTGCCTTATGGAGAAGTTCTCTTGTGAATATGGATTCTTTGACTGCCACAGAGTTAAAGATGGCCCTAGAGTCTCTTGGTTTATGACAAGTAATATCACAAATTTATGTTCACCAAATGTTGATTTCTATCAGTTTGGTATATATGCTGATGCTGTGACTTCTCAAGTTACATCTTCAGCTTTCTTGAATAAGTACTTCTATTGTCTTTGGTGGGGCTTAAGGAATCTGAGTTCTTTGGGACAAAACCTTCTCACCAGCACTTATGTTGGAGAAATAATGGTTGCCATTCTTATTGCAACCCTTGGATTGGTTCTATTTGCCTTGCTCATTGGTAATATGCAGACATACCTCCAATCAACAACGGTCCGGTTAGAAGAGTGGAGGGTGAAAAGAACTGATGCAGAGCAATGGATGCATCACAGGCAACTACCTGCAGAACTAAGAGAGTCTGTGCGTAAATATGATCAATATAAATGGCTGGCTACAAGAGGAGTTGACGAAGAAGCTCTTCTCAAAGGACTTCCGGTCGATCTTCGCAGAGACATCAAGCGCCACCTTTGTCTCGAACTAGTTAGAGGAGTCCCATTGTTTGATCAAATGGATGAGAGGATGCTAGATGCAATATGTGAAAGGCTAAAGCCGGCATTGTCCACTGAAGGCACATATCTCGTTCGCGAGGGTGATCCTGTGAACGAGATGCTCTTCATAATCCGTGGCCATCTTGATTCTTACACAACAAATGGAGGCCGTGCTGGATTCTTCAACTCGTGCCGAATCGGCCCAGGTGATTTCTGTGGTGAGGAACTATTAACATGGGCATTAGACCCAAGACCAAGTGTGATACTCCCATCATCCACTAGAACAGTTAAGGCCATATCAGAAGTAGAGGCATTTGCACTCATAGCAGAGGATCTAAAGTTTGTTGCATCTCAATATAGAAGGCTGCATAGTAAACAACTTCGGAATAGGTTCCGGTTTTACTCACATCATTGGAGAACATGGGCTGCATGTTTCGTTCAAGCCGCGTGGAGACGACACAAGAAAAAGAAGGATGCTGCTGAATTGAGGAACAAGGCAAATGCAAAAAATGTTGAGGTTGAAAAACCAACATCATCAGGATCAGGCTTAGGTGTGTATGCAACAAGGGTGGCCAGGAGCACTAGGAAAGGTGTCAATGAAGTGGTCAATTCTTTGCAGAAGCCAGCAGAACCAGATTTTTCTGTTGATGAATGGAGAAATTCTTAG	2109	0.4125	MGFACSRSVSFDDDPELVEVPASKNDNGIKLKYHIDGRQIPESSSKMAQKKVLRKTKKLLKARVLSRVFSEDYERVNRRLILDPRGQIINRWNKIFLVACLASLFLDPLFFYLPVVQDQVCIDIGISLEVTLTIIRSVVDLFYIIQIFIKFRTAYVAPSSRVFGRGELVIKSYKIAIRYLKMGFWLDFIAALPIPQVLIWIVIPTLRGSTMRNTKNVLRFFIIFQYLPRLFLIFPLSAQIVNATGVVTKTAWAGAAYNLMLYLLASHILGACWYLLSIERQEACWRRVCLMEKFSCEYGFFDCHRVKDGPRVSWFMTSNITNLCSPNVDFYQFGIYADAVTSQVTSSAFLNKYFYCLWWGLRNLSSLGQNLLTSTYVGEIMVAILIATLGLVLFALLIGNMQTYLQSTTVRLEEWRVKRTDAEQWMHHRQLPAELRESVRKYDQYKWLATRGVDEEALLKGLPVDLRRDIKRHLCLELVRGVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRAGFFNSCRIGPGDFCGEELLTWALDPRPSVILPSSTRTVKAISEVEAFALIAEDLKFVASQYRRLHSKQLRNRFRFYSHHWRTWAACFVQAAWRRHKKKKDAAELRNKANAKNVEVEKPTSSGSGLGVYATRVARSTRKGVNEVVNSLQKPAEPDFSVDEWRNS*	703

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lan6g1932	702	CDD	CAP_ED	484	603	IPR000595	-
	Lan6g1932	702	ProSiteProfiles	cAMP/cGMP binding motif profile.	484	581	IPR000595	-
	Lan6g1932	702	PANTHER	PROTEIN CNGC15A	48	696	-	-
	Lan6g1932	702	Pfam	Ion transport protein	92	411	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Lan6g1932	702	Gene3D	Helix hairpin bin	411	475	-	-
	Lan6g1932	702	PRINTS	EAG/ELK/ERG potassium channel family signature	136	146	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lan6g1932	702	PRINTS	EAG/ELK/ERG potassium channel family signature	147	156	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lan6g1932	702	PRINTS	EAG/ELK/ERG potassium channel family signature	264	274	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lan6g1932	702	PRINTS	EAG/ELK/ERG potassium channel family signature	353	370	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lan6g1932	702	PRINTS	EAG/ELK/ERG potassium channel family signature	397	406	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lan6g1932	702	PRINTS	EAG/ELK/ERG potassium channel family signature	447	454	IPR003938	GO:0005249\|GO:0006813\|GO:0016020
	Lan6g1932	702	Gene3D	Jelly Rolls	482	602	IPR014710	-
	Lan6g1932	702	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	48	696	-	-
	Lan6g1932	702	SUPERFAMILY	Voltage-gated potassium channels	83	406	-	-
	Lan6g1932	702	Gene3D	-	95	408	-	-
	Lan6g1932	702	SUPERFAMILY	cAMP-binding domain-like	414	611	IPR018490	-
	Lan6g1932	702	SMART	cnmp_10	484	615	IPR000595	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lan6g1932	Lan-Chr6	30292548	30297086	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lan6g1932	58	697	Ion Channels	AT2G28260	74.688	0.0	995

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lan6g1932	K05391		-	gmx:100811847	1166.37