Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1930 ATGGGAAGCAAATGGAAAAAATTGAAACTTGCTATAGGAATGAACATGTGTGTTTTTACTCCTAAAACTATGGATCATTCAACTTCTACATCGTCTATTAACTCTGCCACCACTTTTTCCGGTGATATCTCGCCGTCCGGTGATGCTTCCGGTCACCAGTTAACCACTCCGAAACCCTCTCCATCTGGTCCTCGCCTCTCAAAATCTGGATCCAAATCCTCTAAGGGAATGTGTGCAATATGCCTGACCATGATGAAACCAGGGCATGGACACGCCATTTTTACTGCAGAATGCTCTCACACTTTCCATTTCCATTGCATCACATCCAATGTAAAACATGGGAATCGAATTTGCCCTGTCTGCAGAGCGAAATGGAAAGAGGTTCCTTTTCAGAATCCTGCTTCTTCTAATGCCTCCAATGACATGTCTCGAATCAACAACCGTGTATCTTCTCGAAGAGGTGATTCCTTGGCCACAATGCCGAGGAGGACTCCTTCCCAACCGGCTCATGTTCCTGAACCAGCTATCTTTGATGATGATGAATCGTTGGATCAACATACTGCAACAACTCAGATTAATAATAATGCTGAGACTGACCGCAGTTTGATAAATACAATGGAGATCAAAACAAACCCTGAAGTTTCAGCGGTTTCAAAGTCAGCCTCTCATGATAACTTTGCTGTGTTAATCCATCTCAAAGCTCCTAAGAGAAATATAACCGAATCATCATCACCTACTTCAGTTCAAAACTCTCGTGCTCCTATTGACCTTGTCACAGTTCTTGATGTAAGTGGTAGCATGGCAGGTACAAAGCTTGCATTACTAAAAAGAGCTATGAGTTTTGTCATACAGAATTTGAGCTCATCCGACCGGCTCTCTGTGGTTGCATTCTCCTCCACAGCGCGTCGCATCTTCCCTCTTCAGCGAATGACCGATACTGGAAGACAGCAGGCATTGCAGGCAGTGAATTCTTTGAGTCCAAGTGGTGGAACAAACATTGCTGAAGGGTTGAGAAAAGGTGCTAAGGTGTTTGTTGACAGAAGGTTCAAGAATCCAGTTGGAAGCATCATATTACTATCTGATGGACAAGACACATACACAATCAGTAGAAGGCCTCATATCGGAACAGATTACGGGGCACTTGTTCCAAATTCCATTCAGCGGAATAATGGTGATGGTTTGCATTTACCAGTGCATGCATTTGGCTTTGGTATTGACCATGATGCCACTGCAATGCACTCAATCTCGGAGGTTTCCGGTGGTACATTCTCTTTTATTGAAGCCGAGGATGTGATTCAGGATGCATTTGCACAGTGTATCGGAGGACTATTGAGTGTGGTGGTTCAGGAATTGCAAGTAGAAGTTTCGTGCATTCACCCAAAGCTGCAGTTTAGTTCAGTGAAAGCAGGAAGTTACCAAACTAACTTAACAGCTAATGCAAGAACAGCTACTATCAAGGTAGGAGATCTATATGCTGAAGAAGAAAGAGACTTTTTGGCGACACTCAATATTCCAGTTGATAAGTCAAGTAATGAGATGTCGTTGTTGATAGTTAAAGGTGTTTATCGAGACTCTATGACAAAAGAAATATTGGGTTCGGAAGAAACTAGTGAAGTGACGATTCAGAGACCTAGTGTAGCTAGAGGACAAGTTGTGTCAATAGAAGTAGACAGGCAAAGGAACAGGCTTAGAGCTGCTGAGGCAATGGCCGAGTCTAGAGTTAAAGCCGAACTTGGCAATTTATCTGGTGCAGTTTCTATCCTTGAGAATTGTCAAAAGGCATTGGCCGAAACCGTTTCTGCAAAGGCCGGCGATAGGTTATGTGTTGCACTTGCTGCTGAGTTGAAGGAGATGCAAGAAAGGATGGCAAACCAACGAATGTACGAACAATCCGGAAGGGCTTATGTGTTGTCAGGACTGAGTTCACATTCATGGCAAAGAGCAACCGCAAGAGGCGATTCAACCGAAAGCACTAGCATCGTTCAAGCATATCAAACACCTTCGATGGTCGACATGGTTACACGTTCACAAACCTTTATTTTGGGAGCTCCACAACTTGGACTAAGTGCTGCTAAATCATTTAATTACAGGAAGAAAGAAAAATGA 2106 0.434 MGSKWKKLKLAIGMNMCVFTPKTMDHSTSTSSINSATTFSGDISPSGDASGHQLTTPKPSPSGPRLSKSGSKSSKGMCAICLTMMKPGHGHAIFTAECSHTFHFHCITSNVKHGNRICPVCRAKWKEVPFQNPASSNASNDMSRINNRVSSRRGDSLATMPRRTPSQPAHVPEPAIFDDDESLDQHTATTQINNNAETDRSLINTMEIKTNPEVSAVSKSASHDNFAVLIHLKAPKRNITESSSPTSVQNSRAPIDLVTVLDVSGSMAGTKLALLKRAMSFVIQNLSSSDRLSVVAFSSTARRIFPLQRMTDTGRQQALQAVNSLSPSGGTNIAEGLRKGAKVFVDRRFKNPVGSIILLSDGQDTYTISRRPHIGTDYGALVPNSIQRNNGDGLHLPVHAFGFGIDHDATAMHSISEVSGGTFSFIEAEDVIQDAFAQCIGGLLSVVVQELQVEVSCIHPKLQFSSVKAGSYQTNLTANARTATIKVGDLYAEEERDFLATLNIPVDKSSNEMSLLIVKGVYRDSMTKEILGSEETSEVTIQRPSVARGQVVSIEVDRQRNRLRAAEAMAESRVKAELGNLSGAVSILENCQKALAETVSAKAGDRLCVALAAELKEMQERMANQRMYEQSGRAYVLSGLSSHSWQRATARGDSTESTSIVQAYQTPSMVDMVTRSQTFILGAPQLGLSAAKSFNYRKKEK* 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1930 701 CDD RING-H2 78 122 - -
Lan6g1930 701 ProSiteProfiles VWFA domain profile. 256 440 IPR002035 -
Lan6g1930 701 Gene3D von Willebrand factor, type A domain 256 441 IPR036465 -
Lan6g1930 701 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 203 IPR013083 -
Lan6g1930 701 Pfam VWA / Hh protein intein-like 605 678 IPR032838 -
Lan6g1930 701 SMART ring_2 78 121 IPR001841 -
Lan6g1930 701 SUPERFAMILY vWA-like 252 440 IPR036465 -
Lan6g1930 701 MobiDBLite consensus disorder prediction 132 154 - -
Lan6g1930 701 SUPERFAMILY RING/U-box 77 129 - -
Lan6g1930 701 ProSiteProfiles Zinc finger RING-type profile. 78 122 IPR001841 -
Lan6g1930 701 PANTHER RETROELEMENT POL POLYPROTEIN-LIKE 3 699 - -
Lan6g1930 701 MobiDBLite consensus disorder prediction 30 73 - -
Lan6g1930 701 Pfam Ring finger domain 77 122 IPR001841 -
Lan6g1930 701 Pfam von Willebrand factor type A domain 256 437 IPR002035 -
Lan6g1930 701 PANTHER CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR 3 699 - -
Lan6g1930 701 SMART VWA_4 254 436 IPR002035 -
Lan6g1930 701 MobiDBLite consensus disorder prediction 132 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1930 Lan-Chr6 30276355 30280921 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1930 72 122 C3H Transcription Factor Family AT5G41440 39.216 8.61e-06 43.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1930 - - gmx:100818406 941.414