Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1925 ATGGTATCTGACGCTAGCAAGAAGAAGGCTGCACAGAAGAAGGCGGCGGCGGCGGCCAAGAGAGGAGGAAAGGCAGCAGCAGCAGCTTCTGCTTCATCGAAGTCGGTGTCTGCGGCCAATAAGCTCGCAAATGGAGTCGGTGATATTCATATCTCCGATCGGAATTGTACCGGCGTTCTTTGCTCGCATCCTTTGTCCCGGGATATTCGGATAGAGTCTCTCTCAGTTACTTTTCACGGACATGATCTGATAGTTGACTCTGAATTGGAGCTAAATTATGGAAGACGTTATGGTTTGCTTGGGTTAAATGGTTGTGGAAAGTCTACTCTGCTTACAGCAATAGGATGCAGAGAGCTTCCCATTCCAGATCACATGGATATTTTTCACCTTTCTAGGGAAATTGAAGCCTCTGATATGTCTTCATTGGAGGCTGTTGTGAACTGTGATGAAGAAAGGTTGAAATTGGAGCAAGAAGCTGAAGCTTTGGCTGCACAGGATGATGGGGGTGGTGAAGCTCTTGAACGGGTTTATGAACGGTTGGAAGGCATGGATGCAGCAACTGCAGAAAAGCGTGCTGCTGAGATCTTATTTGGTCTTGGTTTTGACAAGCAGATGCAGGCAAAGAAAACACGTGATTTTTCTGGTGGCTGGAGAATGAGGATTGCTTTAGCTCGTGCTCTATTTATGAAGCCAACCATCCTTCTACTTGATGAGCCAACCAATCACCTTGACTTGGAAGCCTGTGTGTGGTTGGAGGAGAATTTGAAGCAATTTGACCGGATTCTGGTTGTGATTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAGCAAAAAGCTGAAGCTCTACACTGGTAATTATGATCAGTATGTTCAGACACGTTCTGAACTGGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAGATTTCCTCAATGAAGGAATACATTGCCCGATTTGGCCACGGGTCAGCAAAACTAGCTCGCCAAGCTCAGAGTAAAGAAAAAACCCTGGCAAAAATGGAGCGTGGTGGACTTGCAGAGAAGGTATCAAGGGATAGCGTCTTGGTATTCCGCTTTGTTGATGTGGGAAAACTCCCCCCTCCCGTTCTCCAGTTTGTTGAAGTGTCATTTGGTTACACTCCTGATAATCTCATCTACAAGAACATTGACTTTGGGGTTGATTTAGACTCTAGAATTGCTCTGGTTGGACCCAACGGAGCTGGGAAGAGTACATTACTGAAGCTAATGACAGGTGATTTGGTTCCATCAGATGGCATGGTAAAGCGCCACAATCACCTTCGAATTGCACAATATCACCAGCACTTGACTGAAAAGCTTGACATGGAAATGTCTGCCCTCCTGTATATGATGAGAGAATACCCTGGAAATGAGGAAGAGAAGATGCGAGCAGCAATCGGCAAGTTTGGACTGACAGGTAAGGCGCAGGTGATGCCTATGAAGAATTTATCCGATGGGCAGAGGAGCCGTGTGGTATTTGCATGGTTAGCTTATAGACAGCCTCAGATGCTACTATTGGATGAGCCAACTAATCATTTGGATATTGAGACAATTGACTCATTAGCCGAGGCATTGAAGGAATGGGATGGTGGCATGGTTCTTGTCAGCCATGATTTTAGGCTCATAAATCAGGTTGCCCAAGAGATATGGGTCTGTGCTGATCAAAAAGTGACTAAATGGGATGGTGACATTATGGATTTCAAGAAGCATCTAAAGGCGAAGGCCGGTTTATCTGACTGA 1788 0.4569 MVSDASKKKAAQKKAAAAAKRGGKAAAAASASSKSVSAANKLANGVGDIHISDRNCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIFHLSREIEASDMSSLEAVVNCDEERLKLEQEAEALAAQDDGGGEALERVYERLEGMDAATAEKRAAEILFGLGFDKQMQAKKTRDFSGGWRMRIALARALFMKPTILLLDEPTNHLDLEACVWLEENLKQFDRILVVISHSQDFLNGVCTNIIHMQSKKLKLYTGNYDQYVQTRSELEENQMKQYKWEQEQISSMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLAEKVSRDSVLVFRFVDVGKLPPPVLQFVEVSFGYTPDNLIYKNIDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPSDGMVKRHNHLRIAQYHQHLTEKLDMEMSALLYMMREYPGNEEEKMRAAIGKFGLTGKAQVMPMKNLSDGQRSRVVFAWLAYRQPQMLLLDEPTNHLDIETIDSLAEALKEWDGGMVLVSHDFRLINQVAQEIWVCADQKVTKWDGDIMDFKKHLKAKAGLSD* 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1925 595 Gene3D - 69 333 IPR027417 -
Lan6g1925 595 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Lan6g1925 595 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Lan6g1925 595 CDD ABCF_EF-3 380 572 - -
Lan6g1925 595 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 1 595 - -
Lan6g1925 595 Coils Coil 287 307 - -
Lan6g1925 595 PANTHER - 1 595 - -
Lan6g1925 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Lan6g1925 595 Gene3D - 347 593 IPR027417 -
Lan6g1925 595 Pfam ABC transporter 280 352 IPR032781 -
Lan6g1925 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 364 576 IPR027417 -
Lan6g1925 595 CDD ABCF_EF-3 69 286 - -
Lan6g1925 595 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 316 IPR027417 -
Lan6g1925 595 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Lan6g1925 595 SMART AAA_5 93 295 IPR003593 -
Lan6g1925 595 SMART AAA_5 405 593 IPR003593 -
Lan6g1925 595 Coils Coil 145 165 - -
Lan6g1925 595 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1925 Lan-Chr6 30191409 30196147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1925 380 575 Calmodulin-binding Proteins AT2G36910 26.432 4.07e-10 61.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1925 6 30191409 30196147 Lan10g0148 10 943371 948073 LSH
Lan6g1925 6 30191409 30196147 Lan3g0092 3 640509 645002 LSH