Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1924 ATGGGAAGAGCTCCTTGTTGTGACAAGGCAAATGTGAAGAAAGGACCATGGTCACCAGAAGAAGACTCAAAGCTGAAGAACTACATAGAGAATCATGGAACTGGAGGAAACTGGATAACTCTTCCTCAAAAAGCTGATCTAAAGAGATGTGGAAAAAGTTGCAGACTAAGATGGCTTAACTATCTTAGGCCCAACATCAAGCATGGAGAATTTTCTGATGAGGAAGACAGAATAATTTGCACCCTTTATGCTAACATTGGAAGCAGGTGGTCAATTATAGCTTCTCAATTGCAAGGTAGGACTGACAATGATATCAAGAACCACTGGAACACCAAGCTAAAGAAAAAGTTCATGGGGTTGCTTCCTTTTGAATCTCAATATCATCAAAGAAAACCTTCATCCCAATATTTCTCCACTCAACAAAGCCCACCACTTCCTTCTTATTACACCCATGCTTCAACCCTATCTTTCACAGGCCTTGAACCAATTCCTGTTCCTTCAACTAACTCTCTTCCTTTTTACCAAAACCAAGAGTCCTTAGTTAGTGTAAGTCCCATGCAACAATATCATGACCACTACCCTAATAGTCTGCAAGTGTTTGGAAGTGAAGTAAGTACTTGCAGTTCATCTGATGGGAGCTATAGTCAGGTTAAGCAAGAAATGGGTTTTCATAACTACATGCCCAAAGGGTTTGAAGAGTATTGCAGCAATAATAAATTTTTGCTTAGTGATAAGGGCATTAATAATGATGGAAGTGAGGGTTTTAACCAATGGGAAGATAAGCCAAATGGATGTTTTTTTCAACCATTACAAACCCATTTGGATTATGAACTTGAGGTTATTTATAAGCAACTGATTAATAGTAATAGCTGCAATAATGGTTGCTTCAGTGTTGATGAAAACAAGACTGAGGAGAAGGTCATGTATACAACAACTACTACTACTACTGAGTGGAACTGA 960 0.3865 MGRAPCCDKANVKKGPWSPEEDSKLKNYIENHGTGGNWITLPQKADLKRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICTLYANIGSRWSIIASQLQGRTDNDIKNHWNTKLKKKFMGLLPFESQYHQRKPSSQYFSTQQSPPLPSYYTHASTLSFTGLEPIPVPSTNSLPFYQNQESLVSVSPMQQYHDHYPNSLQVFGSEVSTCSSSDGSYSQVKQEMGFHNYMPKGFEEYCSNNKFLLSDKGINNDGSEGFNQWEDKPNGCFFQPLQTHLDYELEVIYKQLINSNSCNNGCFSVDENKTEEKVMYTTTTTTTEWN* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1924 319 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lan6g1924 319 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lan6g1924 319 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Lan6g1924 319 Gene3D - 7 68 - -
Lan6g1924 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lan6g1924 319 CDD SANT 16 62 IPR001005 -
Lan6g1924 319 Gene3D - 69 142 - -
Lan6g1924 319 PANTHER TRANSCRIPTION FACTOR RAX3 1 295 - -
Lan6g1924 319 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lan6g1924 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lan6g1924 319 SMART sant 67 115 IPR001005 -
Lan6g1924 319 SMART sant 13 64 IPR001005 -
Lan6g1924 319 CDD SANT 70 113 IPR001005 -
Lan6g1924 319 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lan6g1924 319 PANTHER OS09G0431300 PROTEIN 1 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1924 Lan-Chr6 30180658 30182589 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1924 1 119 MYB Transcription Factor Family AT5G57620 84.034 5.23e-72 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan6g1924 Myb_DNA-binding 1.6e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1924 6 30180658 30182589 Lan10g0149 10 954036 956140 LSH
Lan6g1924 6 30180658 30182589 Lan8g1648 8 23455192 23457011 PCT
Lan8g1648 8 23455192 23457011 Lan6g1924 6 30180658 30182589 PCT