Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1916 ATGGATGCAATGGATGTTCACCAAGATAATCTTGTGCACTTTAGTGACTTTGAGCTAAATGAATTCATTGATGATCCAAACTCTTATCAATTTATCAATTCAATCCAAGTGGAAAATGAAGATCCTATCAACAACTTTGGTTCTAATGAATTTATCAATGATTGCTTCTTTGATAACCAATTCCAATCATATCTTATAGAAAAACCAATATTTGATGATCATATCAATAATAATGTTGTGAATGTCTATGATCCAAGCTCTACATTGAACTCCTTGTCTTGTTTTCATGATAAGATTAAGGGAGATGGAGAAGAAGCAAATGATGGAGTGGATTCTTCAGCAACAACTACTACTGAAACTACTACGGATCCTAAGTCGAGGCTAAAAACCGATAGATCCAAGACTCTCATTTCCGAGAGAAGAAGGAGGGGTCGAATGAAGGATAAACTTTATACATTGCGTTCTTTGGTTCCTAACATAACTAAGATGGATAAGGCTTCTATCATTGGAGATGCAGTGCAATATGTACATGAGCTTCAAGCACAAGCTAAGAAGCTGAAGGCTGAGGTTACAGGACTTGAAACATCATTATTAGTGTCCGAAAATTATCAAGGATCAATTAAAAACCCTTTAAAGTTTCATGGCCCACACAACATTCATCCAATTAGCAAGAAAATCATGCAGATTGATATGTTGCAAGTGGAAGAAAAAGGATATTACACAAAAATAGTGAGCAATAAAGGAGAAGGTGTGGCTGCTTCATTGTACAAGGCTCTTGAGTCTCTTTCAGGTTTCAATGTTCAGAATTCAAACTTGTCTGCAGTTTGTGACACTTTTCTACTTACATTTACATTGAATGTTAAAGGTTCTAACCAAGAAATTAACCTGCCAAATTTGAAGCTATGGGTGACTGGGGCTCTTCTGAACCAAGGCTTTGAAGTCATGCCATTTTTCCATGCTTGA 963 0.3614 MDAMDVHQDNLVHFSDFELNEFIDDPNSYQFINSIQVENEDPINNFGSNEFINDCFFDNQFQSYLIEKPIFDDHINNNVVNVYDPSSTLNSLSCFHDKIKGDGEEANDGVDSSATTTTETTTDPKSRLKTDRSKTLISERRRRGRMKDKLYTLRSLVPNITKMDKASIIGDAVQYVHELQAQAKKLKAEVTGLETSLLVSENYQGSIKNPLKFHGPHNIHPISKKIMQIDMLQVEEKGYYTKIVSNKGEGVAASLYKALESLSGFNVQNSNLSAVCDTFLLTFTLNVKGSNQEINLPNLKLWVTGALLNQGFEVMPFFHA* 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1916 320 MobiDBLite consensus disorder prediction 104 131 - -
Lan6g1916 320 MobiDBLite consensus disorder prediction 109 123 - -
Lan6g1916 320 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 13 316 - -
Lan6g1916 320 Pfam Helix-loop-helix DNA-binding domain 137 180 IPR011598 GO:0046983
Lan6g1916 320 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 13 316 - -
Lan6g1916 320 Coils Coil 176 196 - -
Lan6g1916 320 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 200 IPR036638 GO:0046983
Lan6g1916 320 Gene3D - 121 196 IPR036638 GO:0046983
Lan6g1916 320 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 130 179 IPR011598 GO:0046983
Lan6g1916 320 SMART finulus 136 185 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1916 Lan-Chr6 30122438 30124736 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1916 4 312 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.322 8.23e-94 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan6g1916 HLH 1.1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1916 - - gmx:100805451 401.749
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1916 6 30122438 30124736 Lan10g0153 10 991842 994548 LSH
Lan6g1916 6 30122438 30124736 Lan3g0097 3 666902 668485 LSH