Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1913 ATGAACATGGATAGAAGCATTGGCACAAGTGCTAATTCTAGTTGCCATGGTGGTGATCATTGCTCATTTTCTTCCCCTACAACCCCTTTCGAAAGCGTAGGTAAAGAAGAGGAAGACATGGCTAATTGCTTGATTTTATTGGCACAAGGAAAAAGAGGAGAGAATGATAGAGGTAGTGGTGGTAGTAATGAAAGGATCACATGCACCACAACTATAGCCGAAACTACAAATATTACGACTACAATTGTGACCGCAGTCAAAACTACAACAAAAAATAGTTTATATGACTATGAGTGCAAAACATGCAACAAAACATTCTCATCATTTCAAGCGCTTGGCGGACACAGAGCTAGCCACAAGAAGCCGATAATGAATCTAGAGGAAAAGAAATCATTACTATTATCATTATCGTTGTCACCACAGATAAGTTTTGAGTTTGAAGAAAGGAAACAATTCGATGTCGAAAATAGTTCTGAAATTCCAATATCCATTCAATTGGGTTGTGGTAAGAATAATTTTTTTCATGGAAACAAATCCAAAATTCATAAATGTTCCATTTGTGGAGCAAAATTCACATCTGGACAAGCCTTGGGTGGTCACATGAGGAAACATAGGATATATAAAAATCCTAGTACTCATGTAGTGAACATGAGCGGTAGTGACACAAGTTTTGAAGCTTCTGCCACCGACACCACCATAGAAGTTAATCCCTGCAATGTTCTCAAAATTGATCTTAACCTTCCAGCATTAGAGGAGGATTTGATGAAGGGGTGA 774 0.3811 MNMDRSIGTSANSSCHGGDHCSFSSPTTPFESVGKEEEDMANCLILLAQGKRGENDRGSGGSNERITCTTTIAETTNITTTIVTAVKTTTKNSLYDYECKTCNKTFSSFQALGGHRASHKKPIMNLEEKKSLLLSLSLSPQISFEFEERKQFDVENSSEIPISIQLGCGKNNFFHGNKSKIHKCSICGAKFTSGQALGGHMRKHRIYKNPSTHVVNMSGSDTSFEASATDTTIEVNPCNVLKIDLNLPALEEDLMKG* 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1913 257 Pfam C2H2-type zinc finger 182 205 - -
Lan6g1913 257 Pfam C2H2-type zinc finger 97 122 - -
Lan6g1913 257 ProSitePatterns Zinc finger C2H2 type domain signature. 99 119 IPR013087 -
Lan6g1913 257 ProSitePatterns Zinc finger C2H2 type domain signature. 184 204 IPR013087 -
Lan6g1913 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 97 119 IPR013087 -
Lan6g1913 257 PANTHER ZINC FINGER PROTEIN ZAT5 7 255 - -
Lan6g1913 257 MobiDBLite consensus disorder prediction 1 31 - -
Lan6g1913 257 SMART c2h2final6 97 119 IPR013087 -
Lan6g1913 257 SMART c2h2final6 182 204 IPR013087 -
Lan6g1913 257 SUPERFAMILY beta-beta-alpha zinc fingers 97 204 IPR036236 -
Lan6g1913 257 MobiDBLite consensus disorder prediction 1 32 - -
Lan6g1913 257 Gene3D Classic Zinc Finger 170 231 - -
Lan6g1913 257 Gene3D Classic Zinc Finger 73 153 - -
Lan6g1913 257 ProSiteProfiles Zinc finger C2H2 type domain profile. 182 209 IPR013087 -
Lan6g1913 257 PANTHER ZINC FINGER PROTEIN, PUTATIVE-RELATED 7 255 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1913 Lan-Chr6 30108517 30109343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1913 22 254 C2H2 Transcription Factor Family AT2G28200 40.574 1.15e-40 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan6g1913 zf-C2H2_6 4.8e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1913 - - lang:109351032 473.781
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1913 6 30108517 30109343 Lan3g0098 3 677907 679108 LSH
Lan6g1913 6 30108517 30109343 Lan7g0326 7 2198645 2200458 PCT
Lan6g1913 6 30108517 30109343 Lan8g1638 8 23349539 23350951 PCT
Lan6g1913 6 30108517 30109343 Lan13g0408 13 2806499 2807657 PCT
Lan7g0326 7 2198645 2200458 Lan6g1913 6 30108517 30109343 PCT
Lan8g1638 8 23349539 23350951 Lan6g1913 6 30108517 30109343 PCT
Lan13g0408 13 2806499 2807657 Lan6g1913 6 30108517 30109343 PCT