Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1912 ATGGCGAAAGGTACGGATTCTGATGAGTTTTTATTGCTTTTTAGGGCTCGTGTTGGTCTCAAACGTGAATTTCAATTTGCAATGAAGGCTCAATCAGAGATCTGTGGTGGTGCTTCTCTCGGTCGAACCCGGTCTAATAAAACCAGCACGGACCGGGTTCCGGTTCAACATTCTCCTTGCCCTAAACGGTTCAGGAAAACCGGTTCGTTTAAGGATTTGGAGGAACATGATGATGTGGTTAGTGAAGAAGATGCTAAGAGTGATGTATTGGATGTTACTAGCGATGATGAACCGAAGAACCATGTTGGGGAATTGAAATCGGAGGGTGGTGATGGAATGTTGGAGGAACCGAAGAATGATGTGATTGATGAGGGATTGCTGAAGAATGAGGCTTTGAAGGAAGGGGTTGTTTGTGAAATTTCGCGGTCCGTGTTTGATGATGGGGTCAAAGAGGAAGAAAGTGGTGTAGATGGTGATATAATGGTGGTTTCGGTTAATGGCGATGGTGATAAGGGGAGGGAGATGGAATTAGAGAAGCCATTGAGGCGATTAACGCGATCGGTGTTGAGGCAAAACTGTGATGAATTGAAGGTTTTCAGTGATGAGGAAAATGGTGGTACTGAAGCGGTTGGAGTTGATGATAATGTTATAATGGAAACAACTGCAATGTTCATTTGTGAAGAGGAACCGAAGAGTGATATAGTGGGGAGTGTAATTATAAATGGAGGACAAACGAATGAAGAATCTCGTGTTGTATCTTTGAAGGAAGGGGTAGTGGATGAAATTGCAAAGCTTGTTAGTGAAAACGAGATCAAAGAGGAGCACATGGTTTTGCAGGGGTTGGAGAAGGGAGTAACTGATACTCCAGAGGTTAATGCTTCTAATGATACAACCCCGATTTTGGTTAGTGGTTTTTCTGATCAGGTGAAAGAAATGGCTGTGGAGAAGGCAGTAAGACGGTTCACGCGGTCTGCGTTGAAGCCATCATGTGATGAAACAAAGGCCATAACTTATGAGGAAAATGTTATTGACATTGCAGTTGAAATGGATAATAATCTTAGAAGGGAAGCAGAAAATGTCACAATAGTTACCACCCCGACTCTAACAAAAACACCTCGGAGCAGTGCCTTCAAGAAGTTCCCTAGCAAGCTAAAGGACCTTCTAACCATTGGGATTCTTGAGGGTTTGTCAGTGAAGTATATCAGGGGTTCAAAGGCACGGAAACCTGGAGAAAAAGGGCTTTTAGGTGTGATAAGTGGCTCTGGAATTTTGTGCCATTGTGAGACTTGTAAGGGCGTTGAGGTTGTCACGCCATCCATGTTTGAGCTGCATGCTGGTAGTGCAAACAAACGTCCCCCAGAGTATATTTATCTTGATAATGGGAATACTCTCCGAGATGTCATGAATGCCTGTTTGGGTCCGTTGGATACCTTGGATGTAGCAGTTCAAAAGGTCCTTGGTGGCTTCACTATGAAGAAATCTACTAACTGTTTGAACTGTAGAGTGCGTATTTCTGAAGCTGGCAAGGGTTTGTCGAAACTACTATGTGATTCATGTCTGGAGTTGAAAGACTCTCAACGTATTTCCTTTCAAACACCTGCTAAAAACAATACAAGTTTTTCAGTAGCTGTTCAAACACCTGCCATAAGCAATACAAGTGTTTCGTTAGCTGTTCAAACACCTGCCATACACAATGGAAGTGTTCCAGTACCTGTTCAAACACCTGCCATAAGCAATGGAAGTGTTCCAGTACCTGTTCAAACACCTGCCATAAGCATTGCAAGTGTTCCAGTAGCTGTTCAAACACCTGCACCTGCCATAAGCAATATAAGTGTTCCGGTAGCTGTTCTGTCCAGGTCACCGGAACCAGCTGTGGTTCCAAAGTCATTAAAGAATGGGATGAAGCACACAACATCTTGTGGCAAGAGTCAAGGAAAGCTAACCAGAAAGGATCTACGGTTGCATAAGTTGGTCTTTGAAGAGAATGTATTGGAAGATGGAATAGAACTAAGCTATCATGCTCATGGAAAGCCAGTATTGCTTGGTTACAAACGAGGATATGGAATCCATTGTTCATGCTGCAAGAAAGAGATCAGTGCCTCTCAGTTTGAAGCACATGCTGGTTGGGCATCTCGACGCAAGCCTTACTTGCACATATACACACCTGAAGGAGTCTCACTTCACGACTTGTCCATCACTTTATTGAAAGAAAGGAGGTTTTCTATCAGGGAGAATGATGATCTCTGCAGCATATGTCAAGATGGAGGGGATCTTTTGTGTTGTGATGGGTGTCCAAGAGCTTTTCATATAGATTGTGTTCCTCTACCATGCATTCCCAGTGGTACTTGGTATTGTAAGTATTGCCAGAATAATTTCCAAATGGACAAACATGGGGAGCGTAATGGGAGTGCTGTGGACCGAAGATGCATTCGTGTTTTCAAAAGTGTAGAGGTTGATCATGGTGGATGTGCTTTGTGCAGAGGTCATTTTTTCAGCAGGAGCTTTGGTCCTCGGACAGTGATTATTTGTGATCAGTGTGAAAAGGAATACCATGTTGGGTGTTTGAAGGATCATAACATGCAGAACCTAGAGGAATTGCCTGAAGGAAATTGGTTTTGTGGCACAAGTTGCAATCAGATTCATTATACTCTGATGAATTTGGTGGTTGGTGAGAAGAATCTTCCAGTTCCAGATTCTCTTCTAAATTTGATTAAAAAGAAGCATGAAGAAAAAGGTAAAGAAACTGAGGTTGGTCTTGATATTAAATGGAGGGTTCTGAATTGGAAGTTAGCTGCTTCTGATGAAACTAGGAAGTTGCTTTCGAAGGCAGTTGCCATCTTTCATGAACGGTTTGATCCTATAGTTGATTCTTCTTCTGGGCGTGATTTCATTCCAGCAATGCTTTATGGAAGGAATATCAAGGGTCAAGATTTTGGTGGAATGTACTGTGCAGTGCTCAGTGTCAACGAAGTGGTTGTTTCTGCTGGAGTATTTCGTATCTTTGGGCCAGATGTAGCAGAGCTTCCATTAGTAGCGACAATTGGAGAATGCCAAGGACAGGGCTACTTTCAGTGCCTGTTTTCTTGCATTGAGGGCTTACTTGGTTCTTCAAATGTAAGACAACTTGTCCTACCTGCTGCCGAGGAAGCTGAATCAATATGGACCAATAAATTTGGATTTACCAAGCTAAGCCAAGAAGAGATCAACAGTCTTAGAAAATTTTATCAGATTATGGTATTTCAAGGGACCTCATTGCTACAGAAGCCTGTTCCTGCTGCACTTTGA 3285 0.4277 MAKGTDSDEFLLLFRARVGLKREFQFAMKAQSEICGGASLGRTRSNKTSTDRVPVQHSPCPKRFRKTGSFKDLEEHDDVVSEEDAKSDVLDVTSDDEPKNHVGELKSEGGDGMLEEPKNDVIDEGLLKNEALKEGVVCEISRSVFDDGVKEEESGVDGDIMVVSVNGDGDKGREMELEKPLRRLTRSVLRQNCDELKVFSDEENGGTEAVGVDDNVIMETTAMFICEEEPKSDIVGSVIINGGQTNEESRVVSLKEGVVDEIAKLVSENEIKEEHMVLQGLEKGVTDTPEVNASNDTTPILVSGFSDQVKEMAVEKAVRRFTRSALKPSCDETKAITYEENVIDIAVEMDNNLRREAENVTIVTTPTLTKTPRSSAFKKFPSKLKDLLTIGILEGLSVKYIRGSKARKPGEKGLLGVISGSGILCHCETCKGVEVVTPSMFELHAGSANKRPPEYIYLDNGNTLRDVMNACLGPLDTLDVAVQKVLGGFTMKKSTNCLNCRVRISEAGKGLSKLLCDSCLELKDSQRISFQTPAKNNTSFSVAVQTPAISNTSVSLAVQTPAIHNGSVPVPVQTPAISNGSVPVPVQTPAISIASVPVAVQTPAPAISNISVPVAVLSRSPEPAVVPKSLKNGMKHTTSCGKSQGKLTRKDLRLHKLVFEENVLEDGIELSYHAHGKPVLLGYKRGYGIHCSCCKKEISASQFEAHAGWASRRKPYLHIYTPEGVSLHDLSITLLKERRFSIRENDDLCSICQDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNNFQMDKHGERNGSAVDRRCIRVFKSVEVDHGGCALCRGHFFSRSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCGTSCNQIHYTLMNLVVGEKNLPVPDSLLNLIKKKHEEKGKETEVGLDIKWRVLNWKLAASDETRKLLSKAVAIFHERFDPIVDSSSGRDFIPAMLYGRNIKGQDFGGMYCAVLSVNEVVVSAGVFRIFGPDVAELPLVATIGECQGQGYFQCLFSCIEGLLGSSNVRQLVLPAAEEAESIWTNKFGFTKLSQEEINSLRKFYQIMVFQGTSLLQKPVPAAL* 1095
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1912 1094 SUPERFAMILY FYVE/PHD zinc finger 816 875 IPR011011 -
Lan6g1912 1094 Pfam Tify domain binding domain 416 471 IPR032308 -
Lan6g1912 1094 Pfam Tify domain binding domain 683 730 IPR032308 -
Lan6g1912 1094 PANTHER AUTOIMMUNE REGULATOR 257 1092 - -
Lan6g1912 1094 MobiDBLite consensus disorder prediction 65 116 - -
Lan6g1912 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 742 807 IPR013083 -
Lan6g1912 1094 Pfam PHD-finger 749 790 IPR019787 -
Lan6g1912 1094 SUPERFAMILY FYVE/PHD zinc finger 735 789 IPR011011 -
Lan6g1912 1094 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 979 1065 IPR016181 -
Lan6g1912 1094 SMART PHD_3 822 878 IPR001965 -
Lan6g1912 1094 SMART PHD_3 748 789 IPR001965 -
Lan6g1912 1094 ProSiteProfiles Zinc finger PHD-type profile. 746 791 IPR019787 -
Lan6g1912 1094 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 818 880 IPR013083 -
Lan6g1912 1094 CDD PHD1_AIRE 748 788 - -
Lan6g1912 1094 ProSitePatterns Zinc finger PHD-type signature. 749 788 IPR019786 -
Lan6g1912 1094 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 257 1092 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1912 Lan-Chr6 30095302 30101977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1912 358 1090 PHD Transcription Factor Family AT2G36720 43.063 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan6g1912 TDBD 6.2e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1912 - - lang:109350941 2180.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1912 6 30095302 30101977 Lan7g0331 7 2219636 2230128 PCT
Lan7g0331 7 2219636 2230128 Lan6g1912 6 30095302 30101977 PCT