Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1895 ATGAATGACCTTCTCACTGACTCATTTGTTATTGAGGTTAAGAAGGCTCAGCCTTCTAGACAAAGTGATATTGAAATGGGAATGCAAGTTCCAGGAAGCAACTCTGATTTGGGATTGGAAGCTTTTAATAAGCAGATCCACGAGGCCGATAAACAAATTGATAACCTATCTATGCTACTATATAACCTAAAGGATGCTAATGAGGAATCAAAAGCTGTTACCAACGCATCTGCGATGAAAGGCATCAAGAAGAGGATGGAGAAAGATATTGATGAAGTTGGAAGGATTTCATATGGTGTCAAAACAAGAATAGAAGCTATAAGCAGAGATAATCTGAACAATCGAAAAAATCCTGGTTGCGAGAAGGGGACCGGTATTGATAGAGCAAGGATGAATATGACAAATGCCTTGACTAAAAGGTTCAGGGATCTCATGATAGAGTTTCAGACTCTTAGACAAAGAATACAAGATGAATATCGTGAAGTTGTGGAGAGAAGAGTTATCACAGTCACAGGAACTAGGCCGGATGATGAGACAATTGATCACCTGATAGAGACAGGAAACAGTGAACAGATCTTTCAGCAAGCAATTCTAGAAACCGGCAGAGGACAGATTGTAAGCACGGTTGAAGAAATTCAGGAGAGACATGATGCTGTAAAAGAAATCGAGAAAAAGCTTCTTGATTTACATCAGGTTTATCTTGATATGGCTGTCTTAGTTGATGCTCAAGGAGAAATTTTAGACAACATCGAAAGTCAGGTCAACAACGCAGTCGATCATGTCCAGAGAGGGACATCTGCGCTTCAGACCGCTAAGAAACTGCAGAAGAGTTCTCGAAAATGGATGTGCATTGGAATCATTATACTGTTGATAGTAATAGCCATTATAGTTGTTGGTGTTATCAAACCTTGGAAGCATAAGTGA 924 0.3961 MNDLLTDSFVIEVKKAQPSRQSDIEMGMQVPGSNSDLGLEAFNKQIHEADKQIDNLSMLLYNLKDANEESKAVTNASAMKGIKKRMEKDIDEVGRISYGVKTRIEAISRDNLNNRKNPGCEKGTGIDRARMNMTNALTKRFRDLMIEFQTLRQRIQDEYREVVERRVITVTGTRPDDETIDHLIETGNSEQIFQQAILETGRGQIVSTVEEIQERHDAVKEIEKKLLDLHQVYLDMAVLVDAQGEILDNIESQVNNAVDHVQRGTSALQTAKKLQKSSRKWMCIGIIILLIVIAIIVVGVIKPWKHK* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1895 307 Pfam SNARE domain 245 297 IPR000727 -
Lan6g1895 307 PANTHER SYNTAXIN 13 300 IPR045242 -
Lan6g1895 307 SMART tSNARE_6 204 271 IPR000727 -
Lan6g1895 307 SMART SynN_4 34 160 IPR006011 GO:0016020
Lan6g1895 307 SUPERFAMILY t-snare proteins 37 264 IPR010989 GO:0016020|GO:0016192
Lan6g1895 307 Pfam Syntaxin 42 244 IPR006011 GO:0016020
Lan6g1895 307 Gene3D - 203 302 - -
Lan6g1895 307 Coils Coil 39 59 - -
Lan6g1895 307 CDD SNARE_syntaxin1-like 208 270 - -
Lan6g1895 307 Gene3D - 39 167 - -
Lan6g1895 307 CDD SynN 39 196 IPR006011 GO:0016020
Lan6g1895 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 209 271 IPR000727 -
Lan6g1895 307 PANTHER SYNTAXIN OF PLANTS 122 PROTEIN 13 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1895 Lan-Chr6 29998293 30002279 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1895 1 307 SNARE and Associated Proteins AT3G03800 62.215 6.41e-124 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1895 K08486 - gmx:100807404 506.908