Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1885 ATGCCATCTATGATTGAAACAAACGGCACCGTTTTTGAATCTCTATCTCTTACGCAGCCAAACATGATGGAAGGTCTTCACCATTTGGACATGACTACTCAGAACACTTCAGAGAGTGATATCCCTATAATCCGCAACGATGAGTTTGACAGTGGCACAAAATCCGGTAGCGAAAATCATGACGGTGGTGCCTCCGGCGAGGACCAAGATCCACGTCCTAATAAGAAGAAAAAGCGGTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTCTTCAAGGAGTGTCCTCACCCTGATGACAAGCAAAGAAAGGAACTGAGTAAAGAATTGGGATTAGAGCCATTACAAGTCAAGTTTTGGTTTCAGAACAAGCGCACTCAGATGAAGACACAACATGAGCGCCATGAGAACACACAACTTAGGACTGAAAATGATAAGCTTCGTGCAGATAACATGAGGTACAGGGAAGCTCTTGCCAATGCTTCATGTCCTAATTGTGGTGGACCAACTGCTATAGGAGAAATGTCATTTGATGAACATCAACTGAGGCTTGAAAATGCTCGTCTAAGAGAAGAGATTGATAGAATTTCTGCTATAGCTGCCAAGTATGTTGGAAAGCCAGTGGTGAATTATCCACTTCTTTCATCCCCATCTGTTCCTCCACGTCCTCTAGAACTTGGAGTCAATGGTGCTTTTAGTGGACAACAAGGTGGCATTGATATGTATGGAGGTGGAGATCTTTTAAGGTCAATAAGTGGACCCACTGAAGCTGATAAACCAATCATAATTGAGCTTGCTGTTGCAGCCATGGAGGAGCTTATTGGAATGGCACAATTGGGTGAACCTCTATGGTTGACCACACTTGATGGCTCCACCACTATGCTAAATGAGGATGAATATGTTAGGTCTTTTCCTAGAGGGATTGGACCTAAACCTAATGGGTTCAAGTGTGAAGCTTCACGTGAAACTGCTGTGGTTATCATGAACCATGTTAACCTTGTTGAGATTCTCATGGATGCGAACCAATGGTCTACAGTGTTCTCTGGTATAGTCTCAAGAGCTATGACTCTAGAAGTGCTATCAACAGGAGTGGCAGGGAACTACAACGGTGCTTTGCAAGTGATGACAGCAGAATTACAAGTACCTACACCTCTTGTGCCAACTAGAGAGAGTTACTTTGTGAGGTATTGTAAGCAGCACCCTGATGGAACATGGGCAATAGTTGATGTGTCATTGGATAATTTGCGCCCTAGTCCTTCTTCTAAATGTAGAAGAAGGCCTTCTGGTTGTTTGATTCAAGAATTGCCTAATGGCTACTCAAAGGTCATATGGGTTGAGCATGTGGAAGTGGATGATAGAGGTGTTCATAATCTATACAAACAACTTGTTAGCTCTGGACATGCATTTGGTGCAAAACGTTGGATTGCAACCTTGGATCGACAATGTCAAAGGCTTGCTAGTTCCATGGCCACAAACATGCCCACCGTAGATGTTGGCGTGATAACAAACCAAGAAGGAAGGAAAAGCATGTTGAAACTGGCTGAGAGAATGGTAATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACTGCACATACATGGACAACATTATCAGGATCAGGAACAGGTGCTGATGATGTAAGGGTCATGACACGTAAAAGTGTTGATGATCCTGGAAGACCACCTGGTATTGTTCTTAGTGCTGCAACTTCTTTTTGGCTTCCAGTGTCACCTAAAAGTGTCTTTGAATTCCTCCGTGATGAGAATTCAAGAAGTGAGTGGGATATTCTTTCCAATGGTGGAGTTGTTCAAGAAATGGCACATATTGCCAATGGAAGAGACACTGGAAATAGTGTTTCTCTACTTCGAGTGAATAGTGCAAATTCAAGTCAAAGCAACATGTTAATATTACAAGAGAGTTGCACTGATTCAACAGGTTCTTTTGTAATTTATGCTCCTGTAGATATTGCTGCAATGAATGTAGTTCTCAATGGAGGGCACCCAGACTATGTAGCCCTTCTTCCTTCTGGTTTTGCTATACTCCCTGATGGGACTACAACACATGGAAGTAGCATTGTTGAAAATGATCATGGTGGTTCTCTTTTAACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACAGCTAAACTTTCACTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGTACTGTTGAGAGAATTAAGGCTTCCCTTACTGGGGAAGCTGCTTGA 2247 0.4263 MPSMIETNGTVFESLSLTQPNMMEGLHHLDMTTQNTSESDIPIIRNDEFDSGTKSGSENHDGGASGEDQDPRPNKKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSKELGLEPLQVKFWFQNKRTQMKTQHERHENTQLRTENDKLRADNMRYREALANASCPNCGGPTAIGEMSFDEHQLRLENARLREEIDRISAIAAKYVGKPVVNYPLLSSPSVPPRPLELGVNGAFSGQQGGIDMYGGGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQLGEPLWLTTLDGSTTMLNEDEYVRSFPRGIGPKPNGFKCEASRETAVVIMNHVNLVEILMDANQWSTVFSGIVSRAMTLEVLSTGVAGNYNGALQVMTAELQVPTPLVPTRESYFVRYCKQHPDGTWAIVDVSLDNLRPSPSSKCRRRPSGCLIQELPNGYSKVIWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWIATLDRQCQRLASSMATNMPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVSPKSVFEFLRDENSRSEWDILSNGGVVQEMAHIANGRDTGNSVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIAAMNVVLNGGHPDYVALLPSGFAILPDGTTTHGSSIVENDHGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLTGEAA* 749
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1885 748 SMART HOX_1 75 138 IPR001356 GO:0003677
Lan6g1885 748 Gene3D - 64 151 - -
Lan6g1885 748 Pfam Homeodomain 77 132 IPR001356 GO:0003677
Lan6g1885 748 ProSiteProfiles START domain profile. 258 490 IPR002913 GO:0008289
Lan6g1885 748 SUPERFAMILY Bet v1-like 506 740 - -
Lan6g1885 748 Pfam START domain 268 487 IPR002913 GO:0008289
Lan6g1885 748 SUPERFAMILY Homeodomain-like 61 134 IPR009057 -
Lan6g1885 748 CDD homeodomain 77 135 IPR001356 GO:0003677
Lan6g1885 748 ProSitePatterns 'Homeobox' domain signature. 109 132 IPR017970 GO:0000981|GO:0006355
Lan6g1885 748 Gene3D - 314 486 IPR023393 -
Lan6g1885 748 SMART START_1 267 487 IPR002913 GO:0008289
Lan6g1885 748 MobiDBLite consensus disorder prediction 46 74 - -
Lan6g1885 748 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 745 IPR042160 -
Lan6g1885 748 SUPERFAMILY Bet v1-like 258 489 - -
Lan6g1885 748 Coils Coil 140 160 - -
Lan6g1885 748 MobiDBLite consensus disorder prediction 46 85 - -
Lan6g1885 748 CDD START_ArGLABRA2_like 262 486 - -
Lan6g1885 748 ProSiteProfiles 'Homeobox' domain profile. 74 134 IPR001356 GO:0003677
Lan6g1885 748 PANTHER HOMEOBOX LEUCINE ZIPPER PROTEIN 30 745 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1885 Lan-Chr6 29916912 29924173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1885 17 748 Homeobox Transcription Factor Family AT1G05230 77.131 0.0 1137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Lan6g1885 START 1.1e-58 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1885 K09338 - gmx:100797992 1291.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1885 6 29916912 29924173 Lan7g0426 7 3005395 3031720 PCT
Lan6g1885 6 29916912 29924173 Lan8g1535 8 22433763 22440151 PCT
Lan6g1885 6 29916912 29924173 Lan13g0503 13 3732757 3739585 PCT
Lan7g0426 7 3005395 3031720 Lan6g1885 6 29916912 29924173 PCT
Lan8g1535 8 22433763 22440151 Lan6g1885 6 29916912 29924173 PCT
Lan13g0503 13 3732757 3739585 Lan6g1885 6 29916912 29924173 PCT