Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan6g1883 ATGGAGTTGCTTTGTTTCACAAGGCATTGTATCAAATTTATGTGCAAGTTGTTATTGTTCCTCTTGGTTTTGTGCTTGTGGATTCCAAGGGAAGTAGTAGGAAGAACAGGAACTACAACCATTTCAAATTCTACAGATTCTTATTCAAGACCAAGTGTTTTGAGAATTGGAGCATTGTTTACTTTTAATTCTGTTATTGGAAGATCGGCGAGACCGGCAATTATGGCTGCAATTGATGATGTTAATGCTAATACCACCATTCTCCCTGGCACTAAATTGGAAGTTATTTTACATGATACAAATTGCAGTGGCTTTCTTGGAACAGTGGAAGCTCTGCAACTGATGGAAAACGATGTAGTTGTCGCGATTGGTCCGCAATCTTCAGGAATAGCACACATAATCTCTCATGTAGTTAATGAACTCCATGTACCTCTTCTTTCATTTGGCGCAACGGACCCTTCTCTATCTTCTCTTCAGCACCCTTATTTCATCAGAACAACTCAGAATGACTATTTCCAAATGCATGCAATTGCTGACTTGGTTGAGTACTATAGATGGAGTGAGGTGATAGCTATCTTTGTAGATGATGATAATGGAAGGAATGGAGTTTCTGCATTGGGAGACGCTTTGGCGAAAAAACGCGCGAAGATTTCTTATAAGGCTGCTTTTACTCCTGGTGCAACCAAAAGTGATATTAGTGACTTGTTAAATGGAGTTAACTTAATGGAATCGCGCGTCTATGTTCTTCATGTTAATCCTGATTCTGGTTTGGAAATTTTCTCTGTTGCCAAGAAGCTAGGAATGATGACAAGTGGTTATGTATGGATTTCATCGGATTGGCTTCCTTCAGTGTTGGATTCATTAGAGAATGTTGACACCGACAGTGGTGTAATGAATCTCTTACAAGGGGTTATCACTTTTCGTCATCACACTCCAGATACTAATCTTAAAAAGAGTTTTATCTCTCGGTTGAAAAGCCTTAAAGACAAGGATACTAAAAACTTCAACTCTTATGCACTATATGCATATGATTCTGTTTGGTTAGCAGCACATGCTCTTGATGTTTTTCTCAATGAAGGTGGAAACACATCTTTCTCATCCGACCCTGTGTTGCATAACAGAAACGGAAGCATGTTACATTTATCATCGCTTCGTGTTTCCAATGGTGGCCAACAGTTTCTTCAGACAATTTTGAGAACAAACTTCACCGGTATCAGTGGTCAAATTCAGTTTGATATGGATAAGAATTTAATCCATCCAGCATACGATATTCTGAATATCGGCGGATTTGGATCACGTAGAATTGGTTATTGGTCTAATCATTCCGGTCTATCAGTCATAGCTCCTGAAGTATTATATCAGAAACCACCTAACACTTCAACAAGTAATCAACAATTGTACAGTGTTATATGGCCTGGAGAGACAACAAAAATACCAAGGGGATGGGTATTCCCTAACAACGGAAAGCCATTGCGGATAGCAGTGCCTAACCGAGTAAGCTACTTGGAGTTTGTTTCTAAGGACAAGAACCCTCCTGGTGTAAAAGGCTATTGCATTGATGTCTTTGAAGCAGCCATAAACTTGTTGCCTTATCCTGTCCCACGACAGTATATACTATTCGGAAACGGAGATACGAATCCTGACTATAACGACCTTGCGTATCAGGTTTCACAAAATAACTTTGATGCAGCTATTGGAGATGTTACAATAGTCACAAACAGGACAAGGATTTTGGATTTTACTCAACCATTCATGGAATCAGGGTTGGTTGTTGTT 1776 0.3941 MELLCFTRHCIKFMCKLLLFLLVLCLWIPREVVGRTGTTTISNSTDSYSRPSVLRIGALFTFNSVIGRSARPAIMAAIDDVNANTTILPGTKLEVILHDTNCSGFLGTVEALQLMENDVVVAIGPQSSGIAHIISHVVNELHVPLLSFGATDPSLSSLQHPYFIRTTQNDYFQMHAIADLVEYYRWSEVIAIFVDDDNGRNGVSALGDALAKKRAKISYKAAFTPGATKSDISDLLNGVNLMESRVYVLHVNPDSGLEIFSVAKKLGMMTSGYVWISSDWLPSVLDSLENVDTDSGVMNLLQGVITFRHHTPDTNLKKSFISRLKSLKDKDTKNFNSYALYAYDSVWLAAHALDVFLNEGGNTSFSSDPVLHNRNGSMLHLSSLRVSNGGQQFLQTILRTNFTGISGQIQFDMDKNLIHPAYDILNIGGFGSRRIGYWSNHSGLSVIAPEVLYQKPPNTSTSNQQLYSVIWPGETTKIPRGWVFPNNGKPLRIAVPNRVSYLEFVSKDKNPPGVKGYCIDVFEAAINLLPYPVPRQYILFGNGDTNPDYNDLAYQVSQNNFDAAIGDVTIVTNRTRILDFTQPFMESGLVVV 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan6g1883 592 Pfam Receptor family ligand binding region 71 427 IPR001828 -
Lan6g1883 592 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 67 83 - -
Lan6g1883 592 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 127 155 - -
Lan6g1883 592 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 342 354 - -
Lan6g1883 592 Gene3D - 486 591 - -
Lan6g1883 592 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 43 592 - -
Lan6g1883 592 Gene3D - 169 444 - -
Lan6g1883 592 PANTHER GLUTAMATE RECEPTOR 3.4 43 592 - -
Lan6g1883 592 Gene3D - 73 419 - -
Lan6g1883 592 CDD PBP1_GABAb_receptor_plant 55 446 IPR044440 -
Lan6g1883 592 Pfam Ligated ion channel L-glutamate- and glycine-binding site 509 591 IPR019594 GO:0004970|GO:0016020
Lan6g1883 592 SUPERFAMILY Periplasmic binding protein-like I 49 483 IPR028082 -
Lan6g1883 592 SUPERFAMILY Periplasmic binding protein-like II 467 592 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan6g1883 Lan-Chr6 29907748 29910396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan6g1883 50 592 Ion Channels AT1G05200 67.403 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan6g1883 K05387 - gmx:100802782 900.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g1883 6 29907748 29910396 Lan10g0032 10 180108 184925 LSH
Lan8g1539 8 22458147 22464227 Lan6g1883 6 29907748 29910396 PCT
Lan13g0506 13 3756344 3761603 Lan6g1883 6 29907748 29910396 PCT